SMTL ID : 1sid.1 (4 other biounits)

MURINE POLYOMAVIRUS COMPLEXED WITH 3'SIALYL LACTOSE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.65 Å

Oligo State

homo-hexamer

Ligands

6 x BGC- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-SIA.1: 10 residues within 4Å: Chain A: Y.72, R.77, G.78, I.79, N.93, T.94, T.291, V.296, H.298 Chain B: D.85 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.93, A:N.93, A:Y.72, A:Y.72, A:R.77, A:H.298 Hydrophobic interactions: A:V.296 Salt bridges: A:R.77 BGC-GAL-SIA.2: 10 residues within 4Å: Chain B: Y.72, R.77, G.78, I.79, N.80, N.93, T.291, V.296, H.298 Chain C: D.85 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.80, B:G.78, B:G.78, B:N.93, B:Y.72, B:H.298 Hydrophobic interactions: B:V.296 Salt bridges: B:R.77 BGC-GAL-SIA.3: 8 residues within 4Å: Chain C: Y.72, R.77, G.78, I.79, N.93, T.291, H.298 Chain D: D.85 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.93, C:Y.72, C:R.77, C:H.298 Salt bridges: C:R.77 BGC-GAL-SIA.4: 9 residues within 4Å: Chain D: Y.72, R.77, G.78, N.80, N.93, T.291, V.296, H.298 Chain E: D.85 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:N.80, D:N.93, D:Y.72, D:Y.72, D:Y.72, D:R.77, D:H.298 Hydrophobic interactions: D:V.296 Salt bridges: D:R.77 BGC-GAL-SIA.5: 11 residues within 4Å: Chain A: D.85 Chain E: Y.72, R.77, G.78, I.79, N.93, T.94, T.291, N.293, V.296, H.298 8 PLIP interactions: 7 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:G.78, E:I.79, E:N.93, E:T.94, E:T.94, E:Y.72, E:Y.72, E:Y.72, E:H.298 Hydrophobic interactions: E:V.296, A:D.85 Salt bridges: E:R.77, E:H.298 BGC-GAL-SIA.6: 10 residues within 4Å: Chain F: Y.72, R.77, G.78, I.79, N.80, N.93, T.291, N.293, V.296, H.298 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:I.79, F:N.93, F:Y.72, F:R.77, F:H.298 Hydrophobic interactions: F:V.296 Salt bridges: F:R.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stehle, T. et al., Crystal structures of murine polyomavirus in complex with straight-chain and branched-chain sialyloligosaccharide receptor fragments. Structure (1996)

Release Date

1996-06-20

Peptides

POLYOMAVIRUS COAT PROTEIN VP1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

POLYOMAVIRUS COAT PROTEIN VP1

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