SMTL ID : 1a1v.1

HEPATITIS C VIRUS NS3 HELICASE DOMAIN COMPLEXED WITH SINGLE STRANDED SDNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x DU- DU- DU- DU- DU- DU- DU: DNA (5'-D(*UP*UP*UP*UP*UP*UP*UP*U)-3')(Non-covalent)

DU-DU-DU-DU-DU-DU-DU.1: 28 residues within 4Å: Chain A: P.65, S.66, V.67, A.68, T.89, G.90, T.104, G.106, K.107, A.110, T.133, H.204, S.205, K.206, K.207, Y.227, R.228, T.246, D.247, A.248, V.267, T.268, Q.269, T.283, T.285, W.336, Y.337, N.391 Protein-ligand interaction information (PLIP) not available

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: P.40, T.41, G.42, S.43, G.44, K.45, S.46 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.42, A:S.43, A:G.44, A:K.45, A:S.46 Water bridges: A:K.45, A:K.45, A:K.45 Salt bridges: A:K.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, J.L. et al., Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding. Structure (1998)

Release Date

1999-01-13

Peptides

PROTEIN (NS3 PROTEIN): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (NS3 PROTEIN)