- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x AZI: AZIDE ION(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 6 residues within 4Å:- Chain A: R.47
- Chain B: R.346, Y.347
- Chain C: R.47
- Chain D: R.346, Y.347
4 PLIP interactions:1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: B:R.346, D:R.346
- Salt bridges: C:R.47, A:R.47
SO4.6: 6 residues within 4Å:- Chain A: R.346, Y.347
- Chain B: R.47
- Chain C: R.346, Y.347
- Chain D: R.47
4 PLIP interactions:1 interactions with chain C, 1 interactions with chain B, 2 interactions with chain D- Water bridges: C:R.346, D:R.47
- Salt bridges: B:R.47, D:R.47
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)(Non-covalent)
HEM.7: 28 residues within 4Å:- Chain A: R.53, N.54, P.55, H.56, R.93, G.112, F.113, A.114, V.127, Y.128, N.129, F.134, P.139, F.142, S.199, H.201, L.282, F.317, V.333, R.337, S.340, Y.341, A.344, H.345, R.348
- Chain D: L.42, N.46
- Ligands: AZI.1
29 PLIP interactions:28 interactions with chain A, 1 interactions with chain D,- Hydrophobic interactions: A:H.56, A:A.114, A:V.127, A:N.129, A:F.134, A:F.142, A:F.142, A:F.142, A:F.142, A:L.282, A:V.333, A:R.337, A:Y.341, A:Y.341, A:A.344, D:L.42
- Water bridges: A:R.53, A:N.54, A:A.114, A:F.317
- Salt bridges: A:R.53, A:R.53, A:R.93, A:H.345, A:R.348
- pi-Stacking: A:H.56, A:F.142
- pi-Cation interactions: A:R.337
- Metal complexes: A:Y.341
HEM.8: 27 residues within 4Å:- Chain B: R.53, N.54, P.55, H.56, R.93, G.112, F.113, A.114, V.127, Y.128, N.129, F.134, P.139, F.142, S.199, H.201, L.282, F.317, V.333, R.337, S.340, Y.341, A.344, H.345, R.348
- Chain C: N.46
- Ligands: AZI.2
26 PLIP interactions:26 interactions with chain B,- Hydrophobic interactions: B:H.56, B:V.127, B:N.129, B:F.134, B:F.142, B:F.142, B:F.142, B:F.142, B:L.282, B:V.333, B:R.337, B:Y.341, B:Y.341, B:A.344
- Water bridges: B:R.53, B:N.54, B:A.114, B:F.317
- Salt bridges: B:R.53, B:R.93, B:H.345, B:R.348
- pi-Stacking: B:H.56, B:F.142
- pi-Cation interactions: B:R.337
- Metal complexes: B:Y.341
HEM.9: 27 residues within 4Å:- Chain B: N.46
- Chain C: R.53, N.54, P.55, H.56, R.93, G.112, F.113, A.114, V.127, Y.128, N.129, F.134, P.139, F.142, S.199, H.201, L.282, F.317, V.333, R.337, S.340, Y.341, A.344, H.345, R.348
- Ligands: AZI.3
30 PLIP interactions:30 interactions with chain C,- Hydrophobic interactions: C:H.56, C:A.114, C:V.127, C:N.129, C:F.134, C:P.139, C:F.142, C:F.142, C:F.142, C:F.142, C:F.142, C:L.282, C:V.333, C:R.337, C:Y.341, C:Y.341, C:A.344
- Water bridges: C:N.54, C:A.114, C:R.348, C:R.348
- Salt bridges: C:R.53, C:R.53, C:R.93, C:H.345, C:R.348
- pi-Stacking: C:H.56, C:F.142
- pi-Cation interactions: C:R.337
- Metal complexes: C:Y.341
HEM.10: 26 residues within 4Å:- Chain A: N.46
- Chain D: R.53, N.54, P.55, H.56, R.93, G.112, F.113, V.127, Y.128, N.129, F.134, P.139, F.142, S.199, H.201, L.282, F.317, V.333, R.337, S.340, Y.341, A.344, H.345, R.348
- Ligands: AZI.4
27 PLIP interactions:27 interactions with chain D,- Hydrophobic interactions: D:H.56, D:V.127, D:N.129, D:F.134, D:F.142, D:F.142, D:F.142, D:F.142, D:L.282, D:V.333, D:R.337, D:Y.341, D:Y.341, D:A.344
- Water bridges: D:R.53, D:N.54, D:A.114, D:F.317
- Salt bridges: D:R.53, D:R.53, D:R.93, D:H.345, D:R.348
- pi-Stacking: D:H.56, D:F.142
- pi-Cation interactions: D:R.337
- Metal complexes: D:Y.341
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mate, M.J. et al., Structure of catalase-A from Saccharomyces cerevisiae. J.Mol.Biol. (1999)
- Release Date
- 1999-08-13
- Peptides
- CATALASE A: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x AZI: AZIDE ION(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mate, M.J. et al., Structure of catalase-A from Saccharomyces cerevisiae. J.Mol.Biol. (1999)
- Release Date
- 1999-08-13
- Peptides
- CATALASE A: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D