SMTL ID : 1a5x.1

ASV INTEGRASE CORE DOMAIN WITH HIV-1 INTEGRASE INHIBITOR Y3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x Y3: 4-ACETYLAMINO-5-HYDROXYNAPHTHALENE-2,7-DISULFONIC ACID(Non-covalent)

Y3.1: 12 residues within 4Å: Chain A: I.9, Q.11, K.68, Q.102, A.103, M.104 Chain B: K.68, I.95, S.99, G.101, Q.102 Ligands: Y3.2 15 PLIP interactions: 6 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:I.9, A:K.68, B:I.95, B:I.95 Hydrogen bonds: A:Q.11, A:K.68, A:A.103, A:M.104, B:K.68, B:I.95, B:I.95 Salt bridges: B:K.68 Water bridges: B:K.68, B:K.68, B:G.101 Y3.2: 12 residues within 4Å: Chain A: K.68, I.95, S.99, G.101, Q.102 Chain B: I.9, Q.11, K.68, Q.102, A.103, M.104 Ligands: Y3.1 15 PLIP interactions: 9 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:I.95, A:I.95, B:I.9, B:K.68 Hydrogen bonds: A:K.68, A:I.95, A:I.95, B:Q.11, B:K.68, B:A.103, B:M.104 Salt bridges: A:K.68 Water bridges: A:K.68, A:K.68, A:G.101

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Lubkowski, J. et al., Structure of the catalytic domain of avian sarcoma virus integrase with a bound HIV-1 integrase-targeted inhibitor. Proc.Natl.Acad.Sci.USA (1998)

Peptides

INTEGRASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

INTEGRASE

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