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SMTL ID : 1a5x.1
ASV INTEGRASE CORE DOMAIN WITH HIV-1 INTEGRASE INHIBITOR Y3
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.90 Å
Oligo State
homo-dimer
Ligands
2 x
Y3
:
4-ACETYLAMINO-5-HYDROXYNAPHTHALENE-2,7-DISULFONIC ACID
(Non-covalent)
Y3.1:
12 residues within 4Å:
Chain A:
I.9
,
Q.11
,
K.68
,
Q.102
,
A.103
,
M.104
Chain B:
K.68
,
I.95
,
S.99
,
G.101
,
Q.102
Ligands:
Y3.2
16
PLIP interactions
:
10 interactions with chain B
,
6 interactions with chain A
Hydrophobic interactions:
B:I.95
,
B:I.95
,
A:I.9
,
A:K.68
Hydrogen bonds:
B:K.68
,
B:I.95
,
B:I.95
,
A:Q.11
,
A:K.68
,
A:A.103
,
A:M.104
Water bridges:
B:K.68
,
B:A.103
,
B:A.103
,
B:A.103
Salt bridges:
B:K.68
Y3.2:
12 residues within 4Å:
Chain A:
K.68
,
I.95
,
S.99
,
G.101
,
Q.102
Chain B:
I.9
,
Q.11
,
K.68
,
Q.102
,
A.103
,
M.104
Ligands:
Y3.1
16
PLIP interactions
:
6 interactions with chain B
,
10 interactions with chain A
Hydrophobic interactions:
B:I.9
,
B:K.68
,
A:I.95
,
A:I.95
Hydrogen bonds:
B:Q.11
,
B:K.68
,
B:A.103
,
B:M.104
,
A:K.68
,
A:I.95
,
A:I.95
Water bridges:
A:K.68
,
A:A.103
,
A:A.103
,
A:A.103
Salt bridges:
A:K.68
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Lubkowski, J. et al., Structure of the catalytic domain of avian sarcoma virus integrase with a bound HIV-1 integrase-targeted inhibitor. Proc.Natl.Acad.Sci.USA (1998)
Release Date
1998-05-27
Peptides
INTEGRASE:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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1a5v.1
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1a5v.2
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1a5w.1
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