SMTL ID : 1a6e.1 (1 other biounit)

THERMOSOME-MG-ADP-ALF3 COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-8-8-mer

Ligands

16 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: D.94, G.95, A.158, D.390 Ligands: ADP.2, AF3.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.94 MG.4: 4 residues within 4Å: Chain B: D.93, K.163 Ligands: ADP.5, AF3.6 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.93 MG.7: 6 residues within 4Å: Chain C: D.94, G.95, A.158, D.390 Ligands: ADP.8, AF3.9 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.94 MG.10: 4 residues within 4Å: Chain D: D.93, K.163 Ligands: ADP.11, AF3.12 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.93 MG.13: 6 residues within 4Å: Chain E: D.94, G.95, A.158, D.390 Ligands: ADP.14, AF3.15 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:D.94 MG.16: 4 residues within 4Å: Chain F: D.93, K.163 Ligands: ADP.17, AF3.18 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:D.93 MG.19: 6 residues within 4Å: Chain G: D.94, G.95, A.158, D.390 Ligands: ADP.20, AF3.21 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:D.94 MG.22: 4 residues within 4Å: Chain H: D.93, K.163 Ligands: ADP.23, AF3.24 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:D.93 MG.25: 6 residues within 4Å: Chain I: D.94, G.95, A.158, D.390 Ligands: ADP.26, AF3.27 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:D.94 MG.28: 4 residues within 4Å: Chain J: D.93, K.163 Ligands: ADP.29, AF3.30 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:D.93 MG.31: 6 residues within 4Å: Chain K: D.94, G.95, A.158, D.390 Ligands: ADP.32, AF3.33 1 PLIP interactions: 1 interactions with chain K Metal complexes: K:D.94 MG.34: 4 residues within 4Å: Chain L: D.93, K.163 Ligands: ADP.35, AF3.36 1 PLIP interactions: 1 interactions with chain L Metal complexes: L:D.93 MG.37: 6 residues within 4Å: Chain M: D.94, G.95, A.158, D.390 Ligands: ADP.38, AF3.39 1 PLIP interactions: 1 interactions with chain M Metal complexes: M:D.94 MG.40: 4 residues within 4Å: Chain N: D.93, K.163 Ligands: ADP.41, AF3.42 1 PLIP interactions: 1 interactions with chain N Metal complexes: N:D.93 MG.43: 6 residues within 4Å: Chain O: D.94, G.95, A.158, D.390 Ligands: ADP.44, AF3.45 1 PLIP interactions: 1 interactions with chain O Metal complexes: O:D.94 MG.46: 4 residues within 4Å: Chain P: D.93, K.163 Ligands: ADP.47, AF3.48 1 PLIP interactions: 1 interactions with chain P Metal complexes: P:D.93

16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 24 residues within 4Å: Chain A: T.41, L.42, G.43, P.44, D.94, G.95, T.96, T.97, T.98, T.157, S.160, G.407, G.408, G.409, I.444, L.448, V.476, L.478, K.489, V.491, D.493, K.498 Ligands: MG.1, AF3.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.43, A:G.95, A:G.95, A:T.97, A:T.97, A:T.98, A:S.160, A:G.408, A:K.489, A:D.493 Water bridges: A:G.64 ADP.5: 25 residues within 4Å: Chain B: S.40, L.41, G.42, P.43, N.61, D.93, G.94, T.95, T.96, T.97, T.158, S.162, G.408, G.409, G.410, I.445, L.449, I.477, V.479, F.480, M.487, V.492, E.494 Ligands: MG.4, AF3.6 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:G.42, B:N.61, B:G.94, B:G.94, B:T.96, B:T.96, B:T.97, B:N.161, B:G.409, B:E.494 Water bridges: B:G.63 ADP.8: 24 residues within 4Å: Chain C: T.41, L.42, G.43, P.44, D.94, G.95, T.96, T.97, T.98, T.157, S.160, G.407, G.408, G.409, I.444, L.448, V.476, L.478, K.489, V.491, D.493, K.498 Ligands: MG.7, AF3.9 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:G.43, C:G.95, C:G.95, C:T.97, C:T.97, C:T.98, C:S.160, C:G.408, C:K.489, C:D.493 Water bridges: C:G.64 ADP.11: 25 residues within 4Å: Chain D: S.40, L.41, G.42, P.43, N.61, D.93, G.94, T.95, T.96, T.97, T.158, S.162, G.408, G.409, G.410, I.445, L.449, I.477, V.479, F.480, M.487, V.492, E.494 Ligands: MG.10, AF3.12 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:G.42, D:N.61, D:G.94, D:G.94, D:T.96, D:T.96, D:T.97, D:N.161, D:G.409, D:E.494 Water bridges: D:G.63 ADP.14: 24 residues within 4Å: Chain E: T.41, L.42, G.43, P.44, D.94, G.95, T.96, T.97, T.98, T.157, S.160, G.407, G.408, G.409, I.444, L.448, V.476, L.478, K.489, V.491, D.493, K.498 Ligands: MG.13, AF3.15 11 PLIP interactions: 11 interactions with chain E Hydrogen bonds: E:G.43, E:G.95, E:G.95, E:T.97, E:T.97, E:T.98, E:S.160, E:G.408, E:K.489, E:D.493 Water bridges: E:G.64 ADP.17: 25 residues within 4Å: Chain F: S.40, L.41, G.42, P.43, N.61, D.93, G.94, T.95, T.96, T.97, T.158, S.162, G.408, G.409, G.410, I.445, L.449, I.477, V.479, F.480, M.487, V.492, E.494 Ligands: MG.16, AF3.18 11 PLIP interactions: 11 interactions with chain F Hydrogen bonds: F:G.42, F:N.61, F:G.94, F:G.94, F:T.96, F:T.96, F:T.97, F:N.161, F:G.409, F:E.494 Water bridges: F:G.63 ADP.20: 24 residues within 4Å: Chain G: T.41, L.42, G.43, P.44, D.94, G.95, T.96, T.97, T.98, T.157, S.160, G.407, G.408, G.409, I.444, L.448, V.476, L.478, K.489, V.491, D.493, K.498 Ligands: MG.19, AF3.21 11 PLIP interactions: 11 interactions with chain G Hydrogen bonds: G:G.43, G:G.95, G:G.95, G:T.97, G:T.97, G:T.98, G:S.160, G:G.408, G:K.489, G:D.493 Water bridges: G:G.64 ADP.23: 25 residues within 4Å: Chain H: S.40, L.41, G.42, P.43, N.61, D.93, G.94, T.95, T.96, T.97, T.158, S.162, G.408, G.409, G.410, I.445, L.449, I.477, V.479, F.480, M.487, V.492, E.494 Ligands: MG.22, AF3.24 11 PLIP interactions: 11 interactions with chain H Hydrogen bonds: H:G.42, H:N.61, H:G.94, H:G.94, H:T.96, H:T.96, H:T.97, H:N.161, H:G.409, H:E.494 Water bridges: H:G.63 ADP.26: 24 residues within 4Å: Chain I: T.41, L.42, G.43, P.44, D.94, G.95, T.96, T.97, T.98, T.157, S.160, G.407, G.408, G.409, I.444, L.448, V.476, L.478, K.489, V.491, D.493, K.498 Ligands: MG.25, AF3.27 11 PLIP interactions: 11 interactions with chain I Hydrogen bonds: I:G.43, I:G.95, I:G.95, I:T.97, I:T.97, I:T.98, I:S.160, I:G.408, I:K.489, I:D.493 Water bridges: I:G.64 ADP.29: 25 residues within 4Å: Chain J: S.40, L.41, G.42, P.43, N.61, D.93, G.94, T.95, T.96, T.97, T.158, S.162, G.408, G.409, G.410, I.445, L.449, I.477, V.479, F.480, M.487, V.492, E.494 Ligands: MG.28, AF3.30 11 PLIP interactions: 11 interactions with chain J Hydrogen bonds: J:G.42, J:N.61, J:G.94, J:G.94, J:T.96, J:T.96, J:T.97, J:N.161, J:G.409, J:E.494 Water bridges: J:G.63 ADP.32: 24 residues within 4Å: Chain K: T.41, L.42, G.43, P.44, D.94, G.95, T.96, T.97, T.98, T.157, S.160, G.407, G.408, G.409, I.444, L.448, V.476, L.478, K.489, V.491, D.493, K.498 Ligands: MG.31, AF3.33 11 PLIP interactions: 11 interactions with chain K Hydrogen bonds: K:G.43, K:G.95, K:G.95, K:T.97, K:T.97, K:T.98, K:S.160, K:G.408, K:K.489, K:D.493 Water bridges: K:G.64 ADP.35: 25 residues within 4Å: Chain L: S.40, L.41, G.42, P.43, N.61, D.93, G.94, T.95, T.96, T.97, T.158, S.162, G.408, G.409, G.410, I.445, L.449, I.477, V.479, F.480, M.487, V.492, E.494 Ligands: MG.34, AF3.36 11 PLIP interactions: 11 interactions with chain L Hydrogen bonds: L:G.42, L:N.61, L:G.94, L:G.94, L:T.96, L:T.96, L:T.97, L:N.161, L:G.409, L:E.494 Water bridges: L:G.63 ADP.38: 24 residues within 4Å: Chain M: T.41, L.42, G.43, P.44, D.94, G.95, T.96, T.97, T.98, T.157, S.160, G.407, G.408, G.409, I.444, L.448, V.476, L.478, K.489, V.491, D.493, K.498 Ligands: MG.37, AF3.39 11 PLIP interactions: 11 interactions with chain M Hydrogen bonds: M:G.43, M:G.95, M:G.95, M:T.97, M:T.97, M:T.98, M:S.160, M:G.408, M:K.489, M:D.493 Water bridges: M:G.64 ADP.41: 25 residues within 4Å: Chain N: S.40, L.41, G.42, P.43, N.61, D.93, G.94, T.95, T.96, T.97, T.158, S.162, G.408, G.409, G.410, I.445, L.449, I.477, V.479, F.480, M.487, V.492, E.494 Ligands: MG.40, AF3.42 11 PLIP interactions: 11 interactions with chain N Hydrogen bonds: N:G.42, N:N.61, N:G.94, N:G.94, N:T.96, N:T.96, N:T.97, N:N.161, N:G.409, N:E.494 Water bridges: N:G.63 ADP.44: 24 residues within 4Å: Chain O: T.41, L.42, G.43, P.44, D.94, G.95, T.96, T.97, T.98, T.157, S.160, G.407, G.408, G.409, I.444, L.448, V.476, L.478, K.489, V.491, D.493, K.498 Ligands: MG.43, AF3.45 11 PLIP interactions: 11 interactions with chain O Hydrogen bonds: O:G.43, O:G.95, O:G.95, O:T.97, O:T.97, O:T.98, O:S.160, O:G.408, O:K.489, O:D.493 Water bridges: O:G.64 ADP.47: 25 residues within 4Å: Chain P: S.40, L.41, G.42, P.43, N.61, D.93, G.94, T.95, T.96, T.97, T.158, S.162, G.408, G.409, G.410, I.445, L.449, I.477, V.479, F.480, M.487, V.492, E.494 Ligands: MG.46, AF3.48 11 PLIP interactions: 11 interactions with chain P Hydrogen bonds: P:G.42, P:N.61, P:G.94, P:G.94, P:T.96, P:T.96, P:T.97, P:N.161, P:G.409, P:E.494 Water bridges: P:G.63

16 x AF3: ALUMINUM FLUORIDE(Non-covalent)

AF3.3: 12 residues within 4Å: Chain A: T.41, N.62, D.63, G.64, A.65, D.94, G.95, T.96, T.97, D.390 Ligands: MG.1, ADP.2 No protein-ligand interaction detected (PLIP) AF3.6: 12 residues within 4Å: Chain B: N.61, D.62, G.63, V.64, D.93, G.94, T.95, T.96, K.163, D.391 Ligands: MG.4, ADP.5 No protein-ligand interaction detected (PLIP) AF3.9: 12 residues within 4Å: Chain C: T.41, N.62, D.63, G.64, A.65, D.94, G.95, T.96, T.97, D.390 Ligands: MG.7, ADP.8 No protein-ligand interaction detected (PLIP) AF3.12: 12 residues within 4Å: Chain D: N.61, D.62, G.63, V.64, D.93, G.94, T.95, T.96, K.163, D.391 Ligands: MG.10, ADP.11 No protein-ligand interaction detected (PLIP) AF3.15: 12 residues within 4Å: Chain E: T.41, N.62, D.63, G.64, A.65, D.94, G.95, T.96, T.97, D.390 Ligands: MG.13, ADP.14 No protein-ligand interaction detected (PLIP) AF3.18: 12 residues within 4Å: Chain F: N.61, D.62, G.63, V.64, D.93, G.94, T.95, T.96, K.163, D.391 Ligands: MG.16, ADP.17 No protein-ligand interaction detected (PLIP) AF3.21: 12 residues within 4Å: Chain G: T.41, N.62, D.63, G.64, A.65, D.94, G.95, T.96, T.97, D.390 Ligands: MG.19, ADP.20 No protein-ligand interaction detected (PLIP) AF3.24: 12 residues within 4Å: Chain H: N.61, D.62, G.63, V.64, D.93, G.94, T.95, T.96, K.163, D.391 Ligands: MG.22, ADP.23 No protein-ligand interaction detected (PLIP) AF3.27: 12 residues within 4Å: Chain I: T.41, N.62, D.63, G.64, A.65, D.94, G.95, T.96, T.97, D.390 Ligands: MG.25, ADP.26 No protein-ligand interaction detected (PLIP) AF3.30: 12 residues within 4Å: Chain J: N.61, D.62, G.63, V.64, D.93, G.94, T.95, T.96, K.163, D.391 Ligands: MG.28, ADP.29 No protein-ligand interaction detected (PLIP) AF3.33: 12 residues within 4Å: Chain K: T.41, N.62, D.63, G.64, A.65, D.94, G.95, T.96, T.97, D.390 Ligands: MG.31, ADP.32 No protein-ligand interaction detected (PLIP) AF3.36: 12 residues within 4Å: Chain L: N.61, D.62, G.63, V.64, D.93, G.94, T.95, T.96, K.163, D.391 Ligands: MG.34, ADP.35 No protein-ligand interaction detected (PLIP) AF3.39: 12 residues within 4Å: Chain M: T.41, N.62, D.63, G.64, A.65, D.94, G.95, T.96, T.97, D.390 Ligands: MG.37, ADP.38 No protein-ligand interaction detected (PLIP) AF3.42: 12 residues within 4Å: Chain N: N.61, D.62, G.63, V.64, D.93, G.94, T.95, T.96, K.163, D.391 Ligands: MG.40, ADP.41 No protein-ligand interaction detected (PLIP) AF3.45: 12 residues within 4Å: Chain O: T.41, N.62, D.63, G.64, A.65, D.94, G.95, T.96, T.97, D.390 Ligands: MG.43, ADP.44 No protein-ligand interaction detected (PLIP) AF3.48: 12 residues within 4Å: Chain P: N.61, D.62, G.63, V.64, D.93, G.94, T.95, T.96, K.163, D.391 Ligands: MG.46, ADP.47 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ditzel, L. et al., Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT. Cell(Cambridge,Mass.) (1998)

Release Date

1999-03-23

Peptides

THERMOSOME (ALPHA SUBUNIT): ACEGIKMO
THERMOSOME (BETA SUBUNIT): BDFHJLNP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

K
A

M
A

O
A

B
B

D
B

F
B

H
B

J
B

L
B

N
B

P
B

THERMOSOME (ALPHA SUBUNIT)

THERMOSOME (BETA SUBUNIT)

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