- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- hetero-8-8-mer
- Ligands
- 16 x MG: MAGNESIUM ION(Non-covalent)
- 16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 24 residues within 4Å:- Chain A: T.41, L.42, G.43, P.44, D.94, G.95, T.96, T.97, T.98, T.157, S.160, G.407, G.408, G.409, I.444, L.448, V.476, L.478, K.489, V.491, D.493, K.498
- Ligands: MG.1, AF3.3
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:G.43, A:G.95, A:G.95, A:T.97, A:T.97, A:T.98, A:S.160, A:G.408, A:K.489, A:D.493
- Water bridges: A:G.64
ADP.5: 25 residues within 4Å:- Chain B: S.40, L.41, G.42, P.43, N.61, D.93, G.94, T.95, T.96, T.97, T.158, S.162, G.408, G.409, G.410, I.445, L.449, I.477, V.479, F.480, M.487, V.492, E.494
- Ligands: MG.4, AF3.6
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:G.42, B:N.61, B:G.94, B:G.94, B:T.96, B:T.96, B:T.97, B:N.161, B:G.409, B:E.494
- Water bridges: B:G.63
ADP.8: 24 residues within 4Å:- Chain C: T.41, L.42, G.43, P.44, D.94, G.95, T.96, T.97, T.98, T.157, S.160, G.407, G.408, G.409, I.444, L.448, V.476, L.478, K.489, V.491, D.493, K.498
- Ligands: MG.7, AF3.9
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:G.43, C:G.95, C:G.95, C:T.97, C:T.97, C:T.98, C:S.160, C:G.408, C:K.489, C:D.493
- Water bridges: C:G.64
ADP.11: 25 residues within 4Å:- Chain D: S.40, L.41, G.42, P.43, N.61, D.93, G.94, T.95, T.96, T.97, T.158, S.162, G.408, G.409, G.410, I.445, L.449, I.477, V.479, F.480, M.487, V.492, E.494
- Ligands: MG.10, AF3.12
11 PLIP interactions:11 interactions with chain D- Hydrogen bonds: D:G.42, D:N.61, D:G.94, D:G.94, D:T.96, D:T.96, D:T.97, D:N.161, D:G.409, D:E.494
- Water bridges: D:G.63
ADP.14: 24 residues within 4Å:- Chain E: T.41, L.42, G.43, P.44, D.94, G.95, T.96, T.97, T.98, T.157, S.160, G.407, G.408, G.409, I.444, L.448, V.476, L.478, K.489, V.491, D.493, K.498
- Ligands: MG.13, AF3.15
11 PLIP interactions:11 interactions with chain E- Hydrogen bonds: E:G.43, E:G.95, E:G.95, E:T.97, E:T.97, E:T.98, E:S.160, E:G.408, E:K.489, E:D.493
- Water bridges: E:G.64
ADP.17: 25 residues within 4Å:- Chain F: S.40, L.41, G.42, P.43, N.61, D.93, G.94, T.95, T.96, T.97, T.158, S.162, G.408, G.409, G.410, I.445, L.449, I.477, V.479, F.480, M.487, V.492, E.494
- Ligands: MG.16, AF3.18
11 PLIP interactions:11 interactions with chain F- Hydrogen bonds: F:G.42, F:N.61, F:G.94, F:G.94, F:T.96, F:T.96, F:T.97, F:N.161, F:G.409, F:E.494
- Water bridges: F:G.63
ADP.20: 24 residues within 4Å:- Chain G: T.41, L.42, G.43, P.44, D.94, G.95, T.96, T.97, T.98, T.157, S.160, G.407, G.408, G.409, I.444, L.448, V.476, L.478, K.489, V.491, D.493, K.498
- Ligands: MG.19, AF3.21
11 PLIP interactions:11 interactions with chain G- Hydrogen bonds: G:G.43, G:G.95, G:G.95, G:T.97, G:T.97, G:T.98, G:S.160, G:G.408, G:K.489, G:D.493
- Water bridges: G:G.64
ADP.23: 25 residues within 4Å:- Chain H: S.40, L.41, G.42, P.43, N.61, D.93, G.94, T.95, T.96, T.97, T.158, S.162, G.408, G.409, G.410, I.445, L.449, I.477, V.479, F.480, M.487, V.492, E.494
- Ligands: MG.22, AF3.24
11 PLIP interactions:11 interactions with chain H- Hydrogen bonds: H:G.42, H:N.61, H:G.94, H:G.94, H:T.96, H:T.96, H:T.97, H:N.161, H:G.409, H:E.494
- Water bridges: H:G.63
ADP.26: 24 residues within 4Å:- Chain I: T.41, L.42, G.43, P.44, D.94, G.95, T.96, T.97, T.98, T.157, S.160, G.407, G.408, G.409, I.444, L.448, V.476, L.478, K.489, V.491, D.493, K.498
- Ligands: MG.25, AF3.27
11 PLIP interactions:11 interactions with chain I- Hydrogen bonds: I:G.43, I:G.95, I:G.95, I:T.97, I:T.97, I:T.98, I:S.160, I:G.408, I:K.489, I:D.493
- Water bridges: I:G.64
ADP.29: 25 residues within 4Å:- Chain J: S.40, L.41, G.42, P.43, N.61, D.93, G.94, T.95, T.96, T.97, T.158, S.162, G.408, G.409, G.410, I.445, L.449, I.477, V.479, F.480, M.487, V.492, E.494
- Ligands: MG.28, AF3.30
11 PLIP interactions:11 interactions with chain J- Hydrogen bonds: J:G.42, J:N.61, J:G.94, J:G.94, J:T.96, J:T.96, J:T.97, J:N.161, J:G.409, J:E.494
- Water bridges: J:G.63
ADP.32: 24 residues within 4Å:- Chain K: T.41, L.42, G.43, P.44, D.94, G.95, T.96, T.97, T.98, T.157, S.160, G.407, G.408, G.409, I.444, L.448, V.476, L.478, K.489, V.491, D.493, K.498
- Ligands: MG.31, AF3.33
11 PLIP interactions:11 interactions with chain K- Hydrogen bonds: K:G.43, K:G.95, K:G.95, K:T.97, K:T.97, K:T.98, K:S.160, K:G.408, K:K.489, K:D.493
- Water bridges: K:G.64
ADP.35: 25 residues within 4Å:- Chain L: S.40, L.41, G.42, P.43, N.61, D.93, G.94, T.95, T.96, T.97, T.158, S.162, G.408, G.409, G.410, I.445, L.449, I.477, V.479, F.480, M.487, V.492, E.494
- Ligands: MG.34, AF3.36
11 PLIP interactions:11 interactions with chain L- Hydrogen bonds: L:G.42, L:N.61, L:G.94, L:G.94, L:T.96, L:T.96, L:T.97, L:N.161, L:G.409, L:E.494
- Water bridges: L:G.63
ADP.38: 24 residues within 4Å:- Chain M: T.41, L.42, G.43, P.44, D.94, G.95, T.96, T.97, T.98, T.157, S.160, G.407, G.408, G.409, I.444, L.448, V.476, L.478, K.489, V.491, D.493, K.498
- Ligands: MG.37, AF3.39
11 PLIP interactions:11 interactions with chain M- Hydrogen bonds: M:G.43, M:G.95, M:G.95, M:T.97, M:T.97, M:T.98, M:S.160, M:G.408, M:K.489, M:D.493
- Water bridges: M:G.64
ADP.41: 25 residues within 4Å:- Chain N: S.40, L.41, G.42, P.43, N.61, D.93, G.94, T.95, T.96, T.97, T.158, S.162, G.408, G.409, G.410, I.445, L.449, I.477, V.479, F.480, M.487, V.492, E.494
- Ligands: MG.40, AF3.42
11 PLIP interactions:11 interactions with chain N- Hydrogen bonds: N:G.42, N:N.61, N:G.94, N:G.94, N:T.96, N:T.96, N:T.97, N:N.161, N:G.409, N:E.494
- Water bridges: N:G.63
ADP.44: 24 residues within 4Å:- Chain O: T.41, L.42, G.43, P.44, D.94, G.95, T.96, T.97, T.98, T.157, S.160, G.407, G.408, G.409, I.444, L.448, V.476, L.478, K.489, V.491, D.493, K.498
- Ligands: MG.43, AF3.45
11 PLIP interactions:11 interactions with chain O- Hydrogen bonds: O:G.43, O:G.95, O:G.95, O:T.97, O:T.97, O:T.98, O:S.160, O:G.408, O:K.489, O:D.493
- Water bridges: O:G.64
ADP.47: 25 residues within 4Å:- Chain P: S.40, L.41, G.42, P.43, N.61, D.93, G.94, T.95, T.96, T.97, T.158, S.162, G.408, G.409, G.410, I.445, L.449, I.477, V.479, F.480, M.487, V.492, E.494
- Ligands: MG.46, AF3.48
11 PLIP interactions:11 interactions with chain P- Hydrogen bonds: P:G.42, P:N.61, P:G.94, P:G.94, P:T.96, P:T.96, P:T.97, P:N.161, P:G.409, P:E.494
- Water bridges: P:G.63
- 16 x AF3: ALUMINUM FLUORIDE(Non-covalent)
AF3.3: 12 residues within 4Å:- Chain A: T.41, N.62, D.63, G.64, A.65, D.94, G.95, T.96, T.97, D.390
- Ligands: MG.1, ADP.2
No protein-ligand interaction detected (PLIP)AF3.6: 12 residues within 4Å:- Chain B: N.61, D.62, G.63, V.64, D.93, G.94, T.95, T.96, K.163, D.391
- Ligands: MG.4, ADP.5
No protein-ligand interaction detected (PLIP)AF3.9: 12 residues within 4Å:- Chain C: T.41, N.62, D.63, G.64, A.65, D.94, G.95, T.96, T.97, D.390
- Ligands: MG.7, ADP.8
No protein-ligand interaction detected (PLIP)AF3.12: 12 residues within 4Å:- Chain D: N.61, D.62, G.63, V.64, D.93, G.94, T.95, T.96, K.163, D.391
- Ligands: MG.10, ADP.11
No protein-ligand interaction detected (PLIP)AF3.15: 12 residues within 4Å:- Chain E: T.41, N.62, D.63, G.64, A.65, D.94, G.95, T.96, T.97, D.390
- Ligands: MG.13, ADP.14
No protein-ligand interaction detected (PLIP)AF3.18: 12 residues within 4Å:- Chain F: N.61, D.62, G.63, V.64, D.93, G.94, T.95, T.96, K.163, D.391
- Ligands: MG.16, ADP.17
No protein-ligand interaction detected (PLIP)AF3.21: 12 residues within 4Å:- Chain G: T.41, N.62, D.63, G.64, A.65, D.94, G.95, T.96, T.97, D.390
- Ligands: MG.19, ADP.20
No protein-ligand interaction detected (PLIP)AF3.24: 12 residues within 4Å:- Chain H: N.61, D.62, G.63, V.64, D.93, G.94, T.95, T.96, K.163, D.391
- Ligands: MG.22, ADP.23
No protein-ligand interaction detected (PLIP)AF3.27: 12 residues within 4Å:- Chain I: T.41, N.62, D.63, G.64, A.65, D.94, G.95, T.96, T.97, D.390
- Ligands: MG.25, ADP.26
No protein-ligand interaction detected (PLIP)AF3.30: 12 residues within 4Å:- Chain J: N.61, D.62, G.63, V.64, D.93, G.94, T.95, T.96, K.163, D.391
- Ligands: MG.28, ADP.29
No protein-ligand interaction detected (PLIP)AF3.33: 12 residues within 4Å:- Chain K: T.41, N.62, D.63, G.64, A.65, D.94, G.95, T.96, T.97, D.390
- Ligands: MG.31, ADP.32
No protein-ligand interaction detected (PLIP)AF3.36: 12 residues within 4Å:- Chain L: N.61, D.62, G.63, V.64, D.93, G.94, T.95, T.96, K.163, D.391
- Ligands: MG.34, ADP.35
No protein-ligand interaction detected (PLIP)AF3.39: 12 residues within 4Å:- Chain M: T.41, N.62, D.63, G.64, A.65, D.94, G.95, T.96, T.97, D.390
- Ligands: MG.37, ADP.38
No protein-ligand interaction detected (PLIP)AF3.42: 12 residues within 4Å:- Chain N: N.61, D.62, G.63, V.64, D.93, G.94, T.95, T.96, K.163, D.391
- Ligands: MG.40, ADP.41
No protein-ligand interaction detected (PLIP)AF3.45: 12 residues within 4Å:- Chain O: T.41, N.62, D.63, G.64, A.65, D.94, G.95, T.96, T.97, D.390
- Ligands: MG.43, ADP.44
No protein-ligand interaction detected (PLIP)AF3.48: 12 residues within 4Å:- Chain P: N.61, D.62, G.63, V.64, D.93, G.94, T.95, T.96, K.163, D.391
- Ligands: MG.46, ADP.47
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ditzel, L. et al., Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT. Cell(Cambridge,Mass.) (1998)
- Release Date
- 1999-03-23
- Peptides
- THERMOSOME (ALPHA SUBUNIT): ACEGIKMO
THERMOSOME (BETA SUBUNIT): BDFHJLNP - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AI
AK
AM
AO
AB
BD
BF
BH
BJ
BL
BN
BP
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- hetero-8-8-mer
- Ligands
- 16 x MG: MAGNESIUM ION(Non-covalent)
- 16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 16 x AF3: ALUMINUM FLUORIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ditzel, L. et al., Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT. Cell(Cambridge,Mass.) (1998)
- Release Date
- 1999-03-23
- Peptides
- THERMOSOME (ALPHA SUBUNIT): ACEGIKMO
THERMOSOME (BETA SUBUNIT): BDFHJLNP - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AI
AK
AM
AO
AB
BD
BF
BH
BJ
BL
BN
BP
B