SMTL ID : 1a7s.1

ATOMIC RESOLUTION STRUCTURE OF HBP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: R.5, R.122, F.143, N.145 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: Q.113, N.114 Ligands: EOH.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Q.113 Hydrogen bonds: A:N.114 Water bridges: A:Q.113

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: P.111, L.112, A.115, L.184 Ligand excluded by PLIP

15 x EOH: ETHANOL(Non-functional Binders)

EOH.4: 6 residues within 4Å: Chain A: P.9, R.10, G.56, A.57, Y.58, S.67 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.58 Hydrogen bonds: A:S.67, A:S.67 Water bridges: A:R.10 EOH.5: 3 residues within 4Å: Chain A: G.22 Ligands: EOH.9, EOH.18 No protein-ligand interaction detected (PLIP) EOH.6: 8 residues within 4Å: Chain A: F.12, F.14, L.15, Q.124, V.125, A.126, P.178, V.180 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.12, A:V.180 Hydrogen bonds: A:A.126, A:T.177 EOH.7: 4 residues within 4Å: Chain A: P.156, L.208 Ligands: NAG.2, EOH.17 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.208 EOH.8: 5 residues within 4Å: Chain A: I.170, C.171, G.175, S.190 Ligands: EOH.11 No protein-ligand interaction detected (PLIP) EOH.9: 6 residues within 4Å: Chain A: Q.19, T.52, V.54, T.70 Ligands: EOH.5, EOH.18 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.54, A:T.70 Hydrogen bonds: A:Q.19, A:T.52 Water bridges: A:Q.19, A:G.22, A:G.22 EOH.10: 3 residues within 4Å: Chain A: R.132, G.135, R.136 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.136 Hydrogen bonds: A:R.132 Water bridges: A:R.132 EOH.11: 6 residues within 4Å: Chain A: I.170, C.171, N.172, S.192, C.196 Ligands: EOH.8 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.170 Hydrogen bonds: A:N.172 EOH.12: 3 residues within 4Å: Chain A: Q.153, P.200, F.202 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.202 EOH.13: 2 residues within 4Å: Chain A: Q.85, L.87 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.87 Hydrogen bonds: A:Q.85 EOH.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EOH.15: 4 residues within 4Å: Chain A: R.68, Q.69, T.70, R.97 No protein-ligand interaction detected (PLIP) EOH.16: 4 residues within 4Å: Chain A: R.34, Q.94, P.220, G.221 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.220 Hydrogen bonds: A:Q.94 EOH.17: 3 residues within 4Å: Chain A: P.156, R.205 Ligands: EOH.7 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.156 EOH.18: 3 residues within 4Å: Chain A: T.70 Ligands: EOH.5, EOH.9 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.70 Water bridges: A:T.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karlsen, S. et al., Atomic resolution structure of human HBP/CAP37/azurocidin. Acta Crystallogr.,Sect.D (1998)

Release Date

1999-03-23

Peptides

HEPARIN BINDING PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HEPARIN BINDING PROTEIN

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