SMTL ID : 1a85.1

MMP8 WITH MALONIC AND ASPARAGINE BASED INHIBITOR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.53, N.55, G.85, I.86, G.87, D.89 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.53, A:G.85, A:G.87, A:D.89 CA.2: 7 residues within 4Å: Chain A: D.70, G.71, P.72, N.73, I.75, D.93, E.96 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.70, A:G.71, A:N.73, A:I.75, A:D.93, A:E.96

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.63, D.65, H.78, H.91 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.63, A:D.65, A:H.78, A:H.91 ZN.4: 4 residues within 4Å: Chain A: H.113, H.117, H.123 Ligands: 0DY.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.113, A:H.117, A:H.123

1 x 0DY: N~1~-(3-AMINOBENZYL)-N~2~-[(2R)-2-(HYDROXYCARBAMOYL)-4-METHYLPENTANOYL]-L-ASPARTAMIDE(Non-covalent)

0DY.5: 20 residues within 4Å: Chain A: G.74, I.75, L.76, A.77, H.78, A.79, Y.105, L.109, V.110, H.113, E.114, H.117, H.123, L.130, Y.132, P.133, N.134, Y.135, A.136 Ligands: ZN.4 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.75, A:H.113, A:Y.135 Hydrogen bonds: A:G.74, A:L.76, A:A.77, A:A.77, A:L.109, A:E.114, A:P.133, A:N.134, A:Y.135 pi-Stacking: A:H.113

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Brandstetter, H. et al., Structure of malonic acid-based inhibitors bound to human neutrophil collagenase. A new binding mode explains apparently anomalous data. Protein Sci. (1998)

Peptides

MMP-8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MMP-8

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