SMTL ID : 1a9t.1

BOVINE PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH 9-DEAZAINOSINE AND PHOSPHATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x R1P: 1-O-phosphono-alpha-D-ribofuranose(Non-covalent)

R1P.1: 15 residues within 4Å: Chain A: G.32, S.33, H.64, R.84, H.86, Y.88, N.115, A.116, F.200, M.219, S.220, H.257, V.260 Chain C: F.159 Ligands: HPA.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.33, A:S.33, A:S.33, A:Y.88, A:Y.88, A:A.116, A:M.219, A:S.220, A:S.220 Water bridges: A:A.116, A:S.220 Salt bridges: A:H.64, A:R.84, A:H.86 R1P.3: 15 residues within 4Å: Chain A: F.159 Chain B: G.32, S.33, H.64, R.84, H.86, Y.88, N.115, A.116, F.200, M.219, S.220, H.257, V.260 Ligands: HPA.4 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:S.33, B:S.33, B:S.33, B:Y.88, B:Y.88, B:A.116, B:M.219, B:S.220, B:S.220 Water bridges: B:A.116, B:S.220 Salt bridges: B:H.64, B:R.84, B:H.86 R1P.5: 15 residues within 4Å: Chain B: F.159 Chain C: G.32, S.33, H.64, R.84, H.86, Y.88, N.115, A.116, F.200, M.219, S.220, H.257, V.260 Ligands: HPA.6 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:S.33, C:S.33, C:S.33, C:Y.88, C:Y.88, C:A.116, C:M.219, C:S.220, C:S.220 Water bridges: C:A.116, C:S.220 Salt bridges: C:H.64, C:R.84, C:H.86

3 x HPA: HYPOXANTHINE(Non-covalent)

HPA.2: 11 residues within 4Å: Chain A: A.116, A.117, G.118, F.200, E.201, V.217, G.218, M.219, T.242, N.243 Ligands: R1P.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.118, A:E.201, A:T.242, A:N.243, A:N.243 Water bridges: A:E.201 pi-Stacking: A:F.200 HPA.4: 11 residues within 4Å: Chain B: A.116, A.117, G.118, F.200, E.201, V.217, G.218, M.219, T.242, N.243 Ligands: R1P.3 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.118, B:E.201, B:T.242, B:N.243, B:N.243 Water bridges: B:E.201 pi-Stacking: B:F.200 HPA.6: 11 residues within 4Å: Chain C: A.116, A.117, G.118, F.200, E.201, V.217, G.218, M.219, T.242, N.243 Ligands: R1P.5 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:G.118, C:E.201, C:T.242, C:N.243, C:N.243 Water bridges: C:E.201 pi-Stacking: C:F.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mao, C. et al., Calf spleen purine nucleoside phosphorylase complexed with substrates and substrate analogues. Biochemistry (1998)

Release Date

1998-06-17

Peptides

PURINE NUCLEOSIDE PHOSPHORYLASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

PURINE NUCLEOSIDE PHOSPHORYLASE