- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x PDP: PYRIDOXAL-5'-DIPHOSPHATE(Covalent)
PDP.2: 15 residues within 4Å:- Chain A: Y.81, G.126, R.129, W.482, K.559, R.560, K.565, Y.639, R.640, V.641, A.644, G.666, T.667, G.668, K.671
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:R.129, A:Y.639, A:A.644, A:T.667, A:K.671
- Hydrogen bonds: A:R.560, A:T.667, A:G.668
- Salt bridges: A:K.559, A:K.559, A:K.565
PDP.5: 14 residues within 4Å:- Chain B: Y.81, R.129, W.482, K.559, R.560, K.565, Y.639, R.640, V.641, A.644, G.666, T.667, G.668, K.671
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:A.644, B:T.667, B:K.671
- Hydrogen bonds: B:R.560, B:T.667, B:G.668
- Salt bridges: B:K.559, B:K.559, B:R.560, B:K.565
PDP.8: 16 residues within 4Å:- Chain C: Y.81, G.126, W.482, V.558, K.559, R.560, K.565, Y.639, R.640, V.641, A.644, E.663, G.666, T.667, G.668, K.671
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:Y.639, C:V.641, C:A.644, C:T.667, C:K.671
- Hydrogen bonds: C:R.560, C:Y.639, C:G.668
- Salt bridges: C:K.559, C:K.559, C:K.565
PDP.11: 16 residues within 4Å:- Chain D: Y.81, G.125, G.126, R.129, W.482, K.559, R.560, K.565, R.640, V.641, A.644, G.666, T.667, G.668, N.669, K.671
12 PLIP interactions:12 interactions with chain D- Hydrophobic interactions: D:Y.81, D:R.129, D:V.641, D:T.667, D:K.671
- Hydrogen bonds: D:G.126, D:R.560, D:T.667, D:G.668
- Salt bridges: D:K.559, D:K.559, D:K.565
- 4 x IMP: INOSINIC ACID(Non-covalent)
IMP.3: 12 residues within 4Å:- Chain A: W.58, Q.62, Q.63, Y.66, E.67, R.233, R.300, R.301, K.306
- Chain B: D.33, N.35, V.36
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Q.63, A:E.67, A:E.67, A:R.233, B:N.35
- Salt bridges: A:R.300, A:R.301
IMP.6: 10 residues within 4Å:- Chain A: D.33, N.35, V.36
- Chain B: W.58, Y.66, E.67, R.233, R.300, R.301, K.306
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Y.66, B:R.233, B:K.306
- Salt bridges: B:R.300, B:R.301
- pi-Stacking: B:Y.66
IMP.9: 11 residues within 4Å:- Chain C: Q.62, Y.66, E.67, Y.146, R.233, R.300, R.301, K.306
- Chain D: D.33, N.35, V.36
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:R.233, C:K.306, D:N.35
- Salt bridges: C:R.300, C:R.301
- pi-Stacking: C:Y.66
IMP.12: 12 residues within 4Å:- Chain C: D.33, N.35, V.36
- Chain D: W.58, I.59, Q.62, Q.63, Y.66, E.67, R.300, R.301, K.306
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:Y.66, D:K.306
- Salt bridges: D:R.300, D:R.301
- pi-Stacking: D:Y.66
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leonidas, D.D. et al., Control of phosphorylase b conformation by a modified cofactor: crystallographic studies on R-state glycogen phosphorylase reconstituted with pyridoxal 5'-diphosphate. Protein Sci. (1992)
- Release Date
- 1993-10-31
- Peptides
- GLYCOGEN PHOSPHORYLASE B: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x PDP: PYRIDOXAL-5'-DIPHOSPHATE(Covalent)
- 4 x IMP: INOSINIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leonidas, D.D. et al., Control of phosphorylase b conformation by a modified cofactor: crystallographic studies on R-state glycogen phosphorylase reconstituted with pyridoxal 5'-diphosphate. Protein Sci. (1992)
- Release Date
- 1993-10-31
- Peptides
- GLYCOGEN PHOSPHORYLASE B: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D