SMTL ID : 1aid.1

STRUCTURE OF A NON-PEPTIDE INHIBITOR COMPLEXED WITH HIV-1 PROTEASE: DEVELOPING A CYCLE OF STRUCTURE-BASED DRUG DESIGN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: G.49, I.50 Chain B: G.49, I.50 Ligands: THK.2 Ligand excluded by PLIP

1 x THK: 4-(4-CHLORO-PHENYL)-1-{3-[2-(4-FLUORO-PHENYL)-[1,3]DITHIOLAN-2-YL]-PROPYL}-PIPERIDIN-4-OL(Non-covalent)

THK.2: 14 residues within 4Å: Chain A: D.30, V.32, I.47, G.48, I.50, T.80, P.81, I.84 Chain B: I.47, G.48, I.50, I.54, T.80 Ligands: CL.1 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.32, A:I.47, A:I.50, A:I.84, B:I.47, B:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rutenber, E. et al., Structure of a non-peptide inhibitor complexed with HIV-1 protease. Developing a cycle of structure-based drug design. J.Biol.Chem. (1993)

Release Date

1997-10-15

Peptides

HUMAN IMMUNODEFICIENCY VIRUS PROTEASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HUMAN IMMUNODEFICIENCY VIRUS PROTEASE