SMTL ID : 1aj7.1

IMMUNOGLOBULIN 48G7 GERMLINE FAB ANTIBODY COMPLEXED WITH HAPTEN 5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID. AFFINITY MATURATION OF AN ESTEROLYTIC ANTIBODY

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NPE: 5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID(Non-covalent)

NPE.1: 15 residues within 4Å: Chain A: L.89, Y.91, Y.94, R.96, F.98 Chain B: Y.33, H.35, W.47, R.50, A.97, S.98, Y.99, Y.100, G.101, W.104 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:Y.33, A:L.89, A:Y.91, A:R.96 Hydrogen bonds: B:Y.33, B:H.35, B:Y.100, A:R.96, A:R.96 pi-Stacking: B:H.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wedemayer, G.J. et al., Structural insights into the evolution of an antibody combining site. Science (1997)

Release Date

1997-11-12

Peptides

IMMUNOGLOBULIN 48G7 FAB (LIGHT CHAIN): A
IMMUNOGLOBULIN 48G7 FAB (HEAVY CHAIN): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

IMMUNOGLOBULIN 48G7 FAB (LIGHT CHAIN)

IMMUNOGLOBULIN 48G7 FAB (HEAVY CHAIN)

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