SMTL ID : 1apz.1

HUMAN ASPARTYLGLUCOSAMINIDASE COMPLEX WITH REACTION PRODUCT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-2-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.1: 6 residues within 4Å: Chain D: D.76, P.77, N.103, V.104, T.105, S.107 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.15, E.44 No protein-ligand interaction detected (PLIP) NAG.3: 6 residues within 4Å: Chain B: D.76, P.77, N.103, V.104, T.105, S.107 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.104 Hydrogen bonds: B:D.76, B:D.76, B:T.105, B:S.107 NAG.5: 2 residues within 4Å: Chain C: N.15, E.44 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.15

2 x ASP: ASPARTIC ACID(Non-covalent)

ASP.4: 9 residues within 4Å: Chain B: T.1, G.21, I.22, R.29, D.32, S.33, T.52, G.53, G.55 8 PLIP interactions: 7 interactions with chain B, 1 Ligand-Ligand interactions Hydrogen bonds: B:T.1, B:D.32, B:T.52, B:G.53, B:G.53, B:G.55, D.4 Salt bridges: B:R.29 ASP.6: 9 residues within 4Å: Chain D: T.1, G.21, I.22, R.29, D.32, S.33, T.52, G.53, G.55 9 PLIP interactions: 8 interactions with chain D, 1 Ligand-Ligand interactions Hydrogen bonds: D:T.1, D:T.1, D:S.33, D:T.52, D:G.53, D:G.53, D:G.55, D.6 Salt bridges: D:R.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oinonen, C. et al., Three-dimensional structure of human lysosomal aspartylglucosaminidase. Nat.Struct.Biol. (1995)

Release Date

1996-12-23

Peptides

ASPARTYLGLUCOSAMINIDASE: AC
ASPARTYLGLUCOSAMINIDASE: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

ASPARTYLGLUCOSAMINIDASE

ASPARTYLGLUCOSAMINIDASE

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