- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 8 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
HEM.2: 22 residues within 4Å:- Chain A: F.3, I.5, P.6, V.9, M.11, F.28, H.30, H.33, M.34, I.36, A.37, C.38, C.41, H.42, I.51, S.53, C.54, M.55
- Chain B: Q.39, V.45
- Ligands: HEM.3, HEM.4
18 PLIP interactions:17 interactions with chain A, 1 interactions with chain B,- Hydrophobic interactions: A:F.3, A:F.3, A:I.5, A:I.5, A:P.6, A:V.9, A:F.28, A:F.28, A:H.33, A:I.36, A:I.51, B:V.45
- Hydrogen bonds: A:S.53, A:C.54, A:M.55
- Water bridges: A:I.51
- Metal complexes: A:H.30, A:H.42
HEM.3: 18 residues within 4Å:- Chain A: C.41, H.42, H.43, T.44, E.52, S.53, C.54, C.59, H.60, I.69, R.74, T.75, F.76, T.78, D.81, K.84, S.85
- Ligands: HEM.2
13 PLIP interactions:13 interactions with chain A,- Hydrophobic interactions: A:T.44, A:E.52, A:I.69, A:T.75, A:F.76, A:K.84
- Water bridges: A:H.43
- Salt bridges: A:H.43, A:R.74, A:K.84
- pi-Cation interactions: A:K.84
- Metal complexes: A:H.43, A:H.60
HEM.4: 21 residues within 4Å:- Chain A: V.26, T.27, F.28, N.29, S.32, H.33, I.36, Q.40, E.83, K.84, S.85, C.86, C.89, H.90, L.93, D.100, A.101, P.102, C.108
- Ligands: HEM.2, HEM.5
11 PLIP interactions:11 interactions with chain A,- Hydrophobic interactions: A:V.26, A:I.36, A:L.93, A:P.102
- Hydrogen bonds: A:N.29, A:S.32
- Water bridges: A:D.100
- pi-Stacking: A:F.28, A:H.33
- Metal complexes: A:H.33, A:H.90
HEM.5: 22 residues within 4Å:- Chain A: M.11, P.13, Y.19, P.21, K.22, K.23, V.26, M.55, V.72, E.73, F.76, H.77, C.86, V.87, H.90, P.102, L.103, A.104, C.105, C.108, H.109
- Ligands: HEM.4
19 PLIP interactions:19 interactions with chain A,- Hydrophobic interactions: A:M.11, A:P.13, A:Y.19, A:V.72, A:E.73, A:F.76, A:F.76, A:F.76, A:V.87
- Hydrogen bonds: A:Y.19, A:Y.19, A:K.22, A:K.23
- Water bridges: A:H.109
- Salt bridges: A:H.109
- pi-Stacking: A:H.77, A:H.109
- Metal complexes: A:H.77, A:H.109
HEM.7: 22 residues within 4Å:- Chain A: Q.39, V.45
- Chain B: F.3, I.5, P.6, V.9, M.11, F.28, H.30, H.33, M.34, I.36, A.37, C.38, C.41, H.42, I.51, S.53, C.54, M.55
- Ligands: HEM.8, HEM.9
18 PLIP interactions:17 interactions with chain B, 1 interactions with chain A,- Hydrophobic interactions: B:F.3, B:F.3, B:I.5, B:I.5, B:P.6, B:V.9, B:F.28, B:F.28, B:H.33, B:I.36, B:I.51, A:V.45
- Hydrogen bonds: B:S.53, B:C.54, B:M.55
- Water bridges: B:I.51
- Metal complexes: B:H.30, B:H.42
HEM.8: 18 residues within 4Å:- Chain B: C.41, H.42, H.43, T.44, E.52, S.53, C.54, C.59, H.60, I.69, R.74, T.75, F.76, T.78, D.81, K.84, S.85
- Ligands: HEM.7
14 PLIP interactions:14 interactions with chain B,- Hydrophobic interactions: B:T.44, B:E.52, B:I.69, B:T.75, B:F.76, B:K.84
- Water bridges: B:H.43, B:D.81
- Salt bridges: B:H.43, B:R.74, B:K.84
- pi-Cation interactions: B:K.84
- Metal complexes: B:H.43, B:H.60
HEM.9: 21 residues within 4Å:- Chain B: V.26, T.27, F.28, N.29, S.32, H.33, I.36, Q.40, E.83, K.84, S.85, C.86, C.89, H.90, L.93, D.100, A.101, P.102, C.108
- Ligands: HEM.7, HEM.10
11 PLIP interactions:11 interactions with chain B,- Hydrophobic interactions: B:V.26, B:I.36, B:L.93, B:P.102
- Hydrogen bonds: B:N.29, B:S.32
- Water bridges: B:D.100
- pi-Stacking: B:F.28, B:H.33
- Metal complexes: B:H.33, B:H.90
HEM.10: 22 residues within 4Å:- Chain B: M.11, P.13, Y.19, P.21, K.22, K.23, V.26, M.55, V.72, E.73, F.76, H.77, C.86, V.87, H.90, P.102, L.103, A.104, C.105, C.108, H.109
- Ligands: HEM.9
19 PLIP interactions:19 interactions with chain B,- Hydrophobic interactions: B:M.11, B:P.13, B:Y.19, B:V.72, B:E.73, B:F.76, B:F.76, B:F.76, B:V.87
- Hydrogen bonds: B:Y.19, B:Y.19, B:K.22, B:K.23
- Water bridges: B:H.109
- Salt bridges: B:H.109
- pi-Stacking: B:H.77, B:H.109
- Metal complexes: B:H.77, B:H.109
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aubert, C. et al., Structural and kinetic studies of the Y73E mutant of octaheme cytochrome c3 (Mr = 26 000) from Desulfovibrio desulfuricans Norway. Biochemistry (1998)
- Release Date
- 1998-02-04
- Peptides
- CYTOCHROME C3: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 8 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aubert, C. et al., Structural and kinetic studies of the Y73E mutant of octaheme cytochrome c3 (Mr = 26 000) from Desulfovibrio desulfuricans Norway. Biochemistry (1998)
- Release Date
- 1998-02-04
- Peptides
- CYTOCHROME C3: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A