- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x K: POTASSIUM ION(Non-covalent)
- 3 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
NAI.3: 21 residues within 4Å:- Chain B: G.12, G.14, G.15, R.16, M.17, E.38, F.79, T.80, R.81, G.84, H.88, G.102, T.103, T.104, A.126, A.127, N.128, F.129, K.163, F.243
- Ligands: PDC.4
19 PLIP interactions:19 interactions with chain B- Hydrophobic interactions: B:F.243
- Hydrogen bonds: B:G.14, B:G.15, B:R.16, B:M.17, B:T.80, B:G.84, B:G.102, B:T.104, B:F.129, B:K.163
- Water bridges: B:G.12, B:R.16, B:R.16
- Salt bridges: B:R.16, B:R.16, B:R.81, B:R.81
- pi-Stacking: B:F.79
NAI.5: 22 residues within 4Å:- Chain C: G.12, G.14, G.15, R.16, M.17, E.38, R.39, F.79, T.80, R.81, G.84, H.88, G.102, T.103, T.104, A.127, N.128, F.129, K.163, D.165, F.243
- Ligands: PDC.6
24 PLIP interactions:24 interactions with chain C- Hydrophobic interactions: C:F.79, C:F.243
- Hydrogen bonds: C:G.12, C:G.14, C:G.15, C:R.16, C:M.17, C:T.80, C:G.84, C:G.102, C:T.104, C:F.129, C:D.165
- Water bridges: C:R.16, C:R.16, C:G.18, C:G.18, C:R.81, C:R.81, C:N.87, C:R.240
- Salt bridges: C:R.16, C:R.16, C:R.81
NAI.8: 21 residues within 4Å:- Chain D: G.12, G.14, G.15, R.16, M.17, E.38, R.39, F.79, T.80, R.81, G.84, G.102, T.103, T.104, A.126, A.127, N.128, F.129, K.163, F.243
- Ligands: PDC.9
20 PLIP interactions:20 interactions with chain D- Hydrophobic interactions: D:F.79, D:F.243
- Hydrogen bonds: D:G.12, D:G.14, D:G.15, D:R.16, D:M.17, D:T.80, D:G.84, D:G.102, D:T.104, D:F.129, D:K.163
- Water bridges: D:G.12, D:G.18, D:G.18
- Salt bridges: D:R.16, D:R.16, D:R.81, D:R.81
- 3 x PDC: PYRIDINE-2,6-DICARBOXYLIC ACID(Non-covalent)
PDC.4: 11 residues within 4Å:- Chain B: T.104, A.127, N.128, H.160, K.163, S.168, G.169, T.170, R.240, F.243
- Ligands: NAI.3
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:F.243
- Hydrogen bonds: B:K.163, B:G.169, B:T.170, B:T.170, B:R.240
- Salt bridges: B:H.159, B:H.160, B:K.163, B:K.163
- pi-Cation interactions: B:H.159
PDC.6: 9 residues within 4Å:- Chain C: T.104, A.127, H.160, K.163, D.165, S.168, G.169, T.170
- Ligands: NAI.5
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:T.104, C:K.163, C:D.165, C:G.169, C:T.170
- Water bridges: C:R.240
- Salt bridges: C:H.159, C:H.160, C:K.163, C:K.163
- pi-Cation interactions: C:H.159
PDC.9: 11 residues within 4Å:- Chain D: T.104, A.127, N.128, H.159, H.160, K.163, D.165, S.168, G.169, T.170
- Ligands: NAI.8
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:T.104, D:K.163, D:G.169, D:T.170, D:T.170
- Salt bridges: D:H.159, D:H.160, D:K.163, D:K.163
- pi-Cation interactions: D:H.159
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Scapin, G. et al., Three-dimensional structure of Escherichia coli dihydrodipicolinate reductase in complex with NADH and the inhibitor 2,6-pyridinedicarboxylate. Biochemistry (1997)
- Release Date
- 1998-10-14
- Peptides
- DIHYDRODIPICOLINATE REDUCTASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x K: POTASSIUM ION(Non-covalent)
- 3 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- 3 x PDC: PYRIDINE-2,6-DICARBOXYLIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Scapin, G. et al., Three-dimensional structure of Escherichia coli dihydrodipicolinate reductase in complex with NADH and the inhibitor 2,6-pyridinedicarboxylate. Biochemistry (1997)
- Release Date
- 1998-10-14
- Peptides
- DIHYDRODIPICOLINATE REDUCTASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D