SMTL ID : 1atj.1

RECOMBINANT HORSERADISH PEROXIDASE C1A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-hexamer

Ligands

12 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: T.171, D.222, T.225, I.228, D.230 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:T.171, A:D.222, A:T.225, A:T.225, A:I.228 CA.2: 6 residues within 4Å: Chain A: D.43, V.46, G.48, D.50, S.52, I.53 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.43, A:V.46, A:G.48, A:D.50, H2O.1 CA.4: 5 residues within 4Å: Chain B: T.171, D.222, T.225, I.228, D.230 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:T.171, B:D.222, B:T.225, B:T.225, B:I.228 CA.5: 6 residues within 4Å: Chain B: D.43, V.46, G.48, D.50, S.52, I.53 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.43, B:V.46, B:G.48, B:D.50, H2O.7 CA.7: 5 residues within 4Å: Chain C: T.171, D.222, T.225, I.228, D.230 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:T.171, C:D.222, C:T.225, C:T.225, C:I.228 CA.8: 6 residues within 4Å: Chain C: D.43, V.46, G.48, D.50, S.52, I.53 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.43, C:V.46, C:G.48, C:D.50, H2O.12 CA.10: 5 residues within 4Å: Chain D: T.171, D.222, T.225, I.228, D.230 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:T.171, D:D.222, D:T.225, D:T.225, D:I.228 CA.11: 6 residues within 4Å: Chain D: D.43, V.46, G.48, D.50, S.52, I.53 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.43, D:V.46, D:G.48, D:D.50, H2O.18 CA.13: 5 residues within 4Å: Chain E: T.171, D.222, T.225, I.228, D.230 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:T.171, E:D.222, E:T.225, E:T.225, E:I.228 CA.14: 6 residues within 4Å: Chain E: D.43, V.46, G.48, D.50, S.52, I.53 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.43, E:V.46, E:G.48, E:D.50, H2O.24 CA.16: 5 residues within 4Å: Chain F: T.171, D.222, T.225, I.228, D.230 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:T.171, F:D.222, F:T.225, F:T.225, F:I.228 CA.17: 6 residues within 4Å: Chain F: D.43, V.46, G.48, D.50, S.52, I.53 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:D.43, F:V.46, F:G.48, F:D.50, H2O.30

6 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.3: 26 residues within 4Å: Chain A: R.31, A.34, S.35, R.38, F.41, S.73, R.75, P.139, A.140, P.141, L.148, F.152, L.163, L.166, S.167, G.169, H.170, F.172, G.173, K.174, N.175, Q.176, F.179, F.221, I.244, S.246 28 PLIP interactions: 28 interactions with chain A, Hydrophobic interactions: A:A.34, A:R.38, A:F.41, A:F.41, A:F.41, A:P.139, A:L.148, A:F.152, A:L.163, A:L.166, A:F.172, A:F.179, A:I.244 Hydrogen bonds: A:S.35, A:S.73, A:K.174, A:K.174, A:N.175, A:Q.176, A:Q.176 Water bridges: A:R.31, A:R.31 Salt bridges: A:R.31, A:R.38 pi-Stacking: A:F.41, A:F.221 pi-Cation interactions: A:R.38 Metal complexes: A:H.170 HEM.6: 26 residues within 4Å: Chain B: R.31, A.34, S.35, R.38, F.41, S.73, R.75, P.139, A.140, P.141, L.148, F.152, L.163, L.166, S.167, G.169, H.170, F.172, G.173, K.174, N.175, Q.176, F.179, F.221, I.244, S.246 28 PLIP interactions: 28 interactions with chain B, Hydrophobic interactions: B:A.34, B:R.38, B:F.41, B:F.41, B:F.41, B:P.139, B:L.148, B:F.152, B:L.163, B:L.166, B:F.172, B:F.179, B:I.244 Hydrogen bonds: B:S.35, B:S.73, B:K.174, B:K.174, B:N.175, B:Q.176, B:Q.176 Water bridges: B:R.31, B:R.31 Salt bridges: B:R.31, B:R.38 pi-Stacking: B:F.41, B:F.221 pi-Cation interactions: B:R.38 Metal complexes: B:H.170 HEM.9: 26 residues within 4Å: Chain C: R.31, A.34, S.35, R.38, F.41, S.73, R.75, P.139, A.140, P.141, L.148, F.152, L.163, L.166, S.167, G.169, H.170, F.172, G.173, K.174, N.175, Q.176, F.179, F.221, I.244, S.246 28 PLIP interactions: 28 interactions with chain C, Hydrophobic interactions: C:A.34, C:R.38, C:F.41, C:F.41, C:F.41, C:P.139, C:L.148, C:F.152, C:L.163, C:L.166, C:F.172, C:F.179, C:I.244 Hydrogen bonds: C:S.35, C:S.73, C:K.174, C:K.174, C:N.175, C:Q.176, C:Q.176 Water bridges: C:R.31, C:R.31 Salt bridges: C:R.31, C:R.38 pi-Stacking: C:F.41, C:F.221 pi-Cation interactions: C:R.38 Metal complexes: C:H.170 HEM.12: 26 residues within 4Å: Chain D: R.31, A.34, S.35, R.38, F.41, S.73, R.75, P.139, A.140, P.141, L.148, F.152, L.163, L.166, S.167, G.169, H.170, F.172, G.173, K.174, N.175, Q.176, F.179, F.221, I.244, S.246 28 PLIP interactions: 28 interactions with chain D, Hydrophobic interactions: D:A.34, D:R.38, D:F.41, D:F.41, D:F.41, D:P.139, D:L.148, D:F.152, D:L.163, D:L.166, D:F.172, D:F.179, D:I.244 Hydrogen bonds: D:S.35, D:S.73, D:K.174, D:K.174, D:N.175, D:Q.176, D:Q.176 Water bridges: D:R.31, D:R.31 Salt bridges: D:R.31, D:R.38 pi-Stacking: D:F.41, D:F.221 pi-Cation interactions: D:R.38 Metal complexes: D:H.170 HEM.15: 26 residues within 4Å: Chain E: R.31, A.34, S.35, R.38, F.41, S.73, R.75, P.139, A.140, P.141, L.148, F.152, L.163, L.166, S.167, G.169, H.170, F.172, G.173, K.174, N.175, Q.176, F.179, F.221, I.244, S.246 28 PLIP interactions: 28 interactions with chain E, Hydrophobic interactions: E:A.34, E:R.38, E:F.41, E:F.41, E:F.41, E:P.139, E:L.148, E:F.152, E:L.163, E:L.166, E:F.172, E:F.179, E:I.244 Hydrogen bonds: E:S.35, E:S.73, E:K.174, E:K.174, E:N.175, E:Q.176, E:Q.176 Water bridges: E:R.31, E:R.31 Salt bridges: E:R.31, E:R.38 pi-Stacking: E:F.41, E:F.221 pi-Cation interactions: E:R.38 Metal complexes: E:H.170 HEM.18: 26 residues within 4Å: Chain F: R.31, A.34, S.35, R.38, F.41, S.73, R.75, P.139, A.140, P.141, L.148, F.152, L.163, L.166, S.167, G.169, H.170, F.172, G.173, K.174, N.175, Q.176, F.179, F.221, I.244, S.246 28 PLIP interactions: 28 interactions with chain F, Hydrophobic interactions: F:A.34, F:R.38, F:F.41, F:F.41, F:F.41, F:P.139, F:L.148, F:F.152, F:L.163, F:L.166, F:F.172, F:F.179, F:I.244 Hydrogen bonds: F:S.35, F:S.73, F:K.174, F:K.174, F:N.175, F:Q.176, F:Q.176 Water bridges: F:R.31, F:R.31 Salt bridges: F:R.31, F:R.38 pi-Stacking: F:F.41, F:F.221 pi-Cation interactions: F:R.38 Metal complexes: F:H.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gajhede, M. et al., Crystal structure of horseradish peroxidase C at 2.15 A resolution. Nat.Struct.Biol. (1997)

Release Date

1998-02-04

Peptides

PEROXIDASE C1A: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

PEROXIDASE C1A

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