SMTL ID : 1avm.1

THE CAMBIALISTIC SUPEROXIDE DISMUTASE (FE-SOD) OF P. SHERMANII COORDINATED BY AZIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-tetramer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: H.27, H.75, D.161, H.165 Ligands: AZI.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.27, A:H.75, A:D.161, A:H.165, H2O.1 FE.3: 5 residues within 4Å: Chain B: H.27, H.75, D.161, H.165 Ligands: AZI.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.27, B:H.75, B:D.161, B:H.165, H2O.9 FE.5: 5 residues within 4Å: Chain C: H.27, H.75, D.161, H.165 Ligands: AZI.6 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.27, C:H.75, C:D.161, C:H.165, H2O.17 FE.7: 5 residues within 4Å: Chain D: H.27, H.75, D.161, H.165 Ligands: AZI.8 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.27, D:H.75, D:D.161, D:H.165, H2O.25

4 x AZI: AZIDE ION(Non-covalent)

AZI.2: 7 residues within 4Å: Chain A: H.27, H.31, H.32, Y.35, H.75, H.165 Ligands: FE.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.75 AZI.4: 7 residues within 4Å: Chain B: H.27, H.31, H.32, Y.35, H.75, H.165 Ligands: FE.3 No protein-ligand interaction detected (PLIP) AZI.6: 7 residues within 4Å: Chain C: H.27, H.31, H.32, Y.35, H.75, H.165 Ligands: FE.5 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.27, C:Y.35 AZI.8: 7 residues within 4Å: Chain D: H.27, H.31, H.32, Y.35, H.75, H.165 Ligands: FE.7 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:H.27, D:Y.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmidt, M. et al., The Structure of the Azide Coordinated Superoxide Dismutase of P. Shermanii Investigated by X-Ray Structure Analysis, Exafs, Mossbauer-and Epr Spectroscopy. Inorg.Chim.Acta. (1998)

Release Date

1998-03-18

Peptides

SUPEROXIDE DISMUTASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

SUPEROXIDE DISMUTASE

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