SMTL ID : 1axs.1 (1 other biounit)

MATURE OXY-COPE CATALYTIC ANTIBODY WITH HAPTEN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

5 x CD: CADMIUM ION(Non-covalent)

CD.1: 1 residues within 4Å: Chain A: D.167 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.167, A:D.167 CD.2: 2 residues within 4Å: Chain A: Q.27, E.93 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.93, H2O.2 CD.3: 1 residues within 4Å: Chain A: E.143 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.143, A:E.143, H2O.1 CD.4: 1 residues within 4Å: Chain B: S.75 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.75, H2O.3 CD.5: 3 residues within 4Å: Chain B: N.206, K.213, D.215 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.215

1 x HOP: (1S,2S,5S)2-(4-GLUTARIDYLBENZYL)-5-PHENYL-1-CYCLOHEXANOL(Non-covalent)

HOP.6: 12 residues within 4Å: Chain A: N.34, F.36, L.89, Y.91, Y.96 Chain B: E.35, W.47, G.99, H.100, Y.105, D.108, W.110 15 PLIP interactions: 10 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:E.35, B:H.100, B:D.108, B:W.110, B:W.110, A:F.36, A:L.89, A:Y.91, A:Y.91 Hydrogen bonds: B:E.35, B:H.100, B:H.100 pi-Stacking: B:H.100, B:Y.105, A:Y.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ulrich, H.D. et al., The interplay between binding energy and catalysis in the evolution of a catalytic antibody. Nature (1997)

Release Date

1998-02-04

Peptides

OXY-COPE CATALYTIC ANTIBODY: A
OXY-COPE CATALYTIC ANTIBODY: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

OXY-COPE CATALYTIC ANTIBODY

OXY-COPE CATALYTIC ANTIBODY

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