SMTL ID : 1b08.1

LUNG SURFACTANT PROTEIN D (SP-D) (FRAGMENT)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-trimer

Ligands

9 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.124, N.126, E.132, N.144, D.145 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.124, A:E.132, A:D.145, A:D.145, H2O.1 CA.2: 5 residues within 4Å: Chain A: D.100, E.104, D.127, E.132, D.133 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.100, A:E.104, A:D.127, A:D.133, H2O.1 CA.3: 2 residues within 4Å: Chain A: E.104, D.133 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.104, A:D.133, H2O.1, H2O.3 CA.4: 5 residues within 4Å: Chain B: E.124, N.126, E.132, N.144, D.145 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.124, B:E.132, B:D.145, B:D.145, H2O.4 CA.5: 5 residues within 4Å: Chain B: D.100, E.104, D.127, E.132, D.133 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.100, B:E.104, B:D.127, B:D.133, H2O.3 CA.6: 2 residues within 4Å: Chain B: E.104, D.133 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.104, H2O.4, H2O.4, H2O.4, H2O.6 CA.7: 5 residues within 4Å: Chain C: E.124, N.126, E.132, N.144, D.145 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.124, C:E.132, C:D.145, C:D.145, H2O.7 CA.8: 5 residues within 4Å: Chain C: D.100, E.104, D.127, E.132, D.133 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.100, C:E.104, C:D.127, C:D.133, H2O.6 CA.9: 2 residues within 4Å: Chain C: E.104, D.133 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.104, C:D.133, C:D.133, H2O.7, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hakansson, K. et al., Crystal structure of the trimeric alpha-helical coiled-coil and the three lectin domains of human lung surfactant protein D. Structure Fold.Des. (1999)

Release Date

1999-12-01

Peptides

PROTEIN (LUNG SURFACTANT PROTEIN D): ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

PROTEIN (LUNG SURFACTANT PROTEIN D)