SMTL ID : 1b3r.1

RAT LIVER S-ADENOSYLHOMOCYSTEIN HYDROLASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 30 residues within 4Å: Chain A: D.189, N.190, C.194, G.219, Y.220, G.221, D.222, V.223, G.224, T.241, E.242, I.243, D.244, N.247, T.274, T.275, G.276, C.277, I.280, I.298, G.299, H.300, L.343, N.345, H.352 Chain B: T.406, L.408, Q.412, K.425, Y.429 17 PLIP interactions: 12 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:D.222, A:V.223, A:I.243, A:D.244, A:N.247, A:T.275, A:G.299, A:N.345, A:N.345, B:T.406, B:K.425, B:Y.429 Water bridges: A:N.190, A:D.222, A:F.301, B:Q.412, B:Q.412 NAD.2: 31 residues within 4Å: Chain A: L.408, Q.412, L.416, K.425, Y.429 Chain B: T.157, D.189, N.190, C.194, G.219, Y.220, G.221, D.222, V.223, G.224, T.241, E.242, I.243, D.244, N.247, T.274, T.275, G.276, C.277, I.280, I.298, G.299, H.300, L.343, N.345, H.352 16 PLIP interactions: 13 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.222, B:V.223, B:I.243, B:D.244, B:N.247, B:T.275, B:G.299, B:N.345, B:N.345, A:Q.412, A:K.425, A:Y.429 Water bridges: B:N.190, B:D.222, B:H.300, B:H.300 NAD.3: 32 residues within 4Å: Chain C: T.157, D.189, N.190, C.194, G.219, Y.220, G.221, D.222, V.223, G.224, T.241, E.242, I.243, D.244, N.247, T.274, T.275, G.276, C.277, I.280, I.298, G.299, H.300, L.343, N.345, L.346, H.352 Chain D: L.408, Q.412, L.416, K.425, Y.429 14 PLIP interactions: 10 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:D.222, C:V.223, C:I.243, C:D.244, C:N.247, C:T.275, C:G.299, C:N.345, C:N.345, C:H.352, D:Q.412, D:K.425, D:Y.429 Water bridges: D:Q.412 NAD.4: 30 residues within 4Å: Chain C: T.406, L.408, Q.412, K.425, Y.429 Chain D: D.189, N.190, C.194, G.219, Y.220, G.221, D.222, V.223, G.224, T.241, E.242, I.243, D.244, N.247, T.274, T.275, G.276, C.277, I.280, I.298, G.299, H.300, L.343, N.345, H.352 13 PLIP interactions: 9 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:D.222, D:V.223, D:I.243, D:D.244, D:N.247, D:T.275, D:N.345, D:N.345, C:Q.412, C:K.425, C:Y.429 Water bridges: D:G.299, C:Q.412

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Y. et al., Crystal structure of S-adenosylhomocysteine hydrolase from rat liver. Biochemistry (1999)

Release Date

1998-12-23

Peptides

PROTEIN (S-ADENOSYLHOMOCYSTEINE HYDROLASE): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

PROTEIN (S-ADENOSYLHOMOCYSTEINE HYDROLASE)

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