SMTL ID : 1b3z.1

XYLANASE FROM PENICILLIUM SIMPLICISSIMUM, COMPLEX WITH XYLOPENTAOSE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x XYP- XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose

XYP-XYP-XYP.1: 13 residues within 4Å: Chain A: E.47, N.48, K.51, H.84, W.88, Q.91, N.131, E.132, Q.208, E.238, W.268, W.276 Ligands: XYS-XYP.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.91

1 x XYS- XYP: beta-D-xylopyranose-(1-4)-alpha-D-xylopyranose(Non-covalent)

XYS-XYP.2: 6 residues within 4Å: Chain A: E.132, Y.175, H.210, W.276, R.277 Ligands: XYP-XYP-XYP.1 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Y.175, A:N.176 Salt bridges: A:H.210, A:R.277

1 x XYP: beta-D-xylopyranose(Non-covalent)

XYP.3: 5 residues within 4Å: Chain A: D.68, N.72, R.119, Y.120, K.123 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.68, A:D.68, A:K.123 Water bridges: A:N.72, A:K.123 Salt bridges: A:K.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmidt, A. et al., Xylan binding subsite mapping in the xylanase from Penicillium simplicissimum using xylooligosaccharides as cryo-protectant. Biochemistry (1999)

Release Date

1999-04-06

Peptides

PROTEIN (XYLANASE): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (XYLANASE)

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