SMTL ID : 1b6t.1

PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE IN COMPLEX WITH 3'-DEPHOSPHO-COA FROM ESCHERICHIA COLI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-hexamer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.121, K.122 Chain B: H.104, R.107 7 PLIP interactions: 2 interactions with chain B, 5 interactions with chain A Salt bridges: B:H.104, B:R.107, A:K.122 Hydrogen bonds: A:R.24, A:K.122 Water bridges: A:E.123, A:E.123 SO4.2: 6 residues within 4Å: Chain B: S.39, P.40, S.41 Chain F: E.134, R.137, H.138 9 PLIP interactions: 4 interactions with chain B, 5 interactions with chain F Hydrogen bonds: B:S.41, B:S.41 Water bridges: B:S.39, B:S.41, F:E.134, F:E.134, F:H.138 Salt bridges: F:R.137, F:H.138 SO4.3: 4 residues within 4Å: Chain A: H.104, R.107 Chain B: S.121, K.122 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.24, B:P.120, B:K.122 Water bridges: B:E.123, B:E.123 Salt bridges: B:K.122, A:R.107 SO4.5: 4 residues within 4Å: Chain C: S.121, K.122 Chain D: H.104, R.107 7 PLIP interactions: 2 interactions with chain D, 5 interactions with chain C Salt bridges: D:H.104, D:R.107, C:K.122 Hydrogen bonds: C:R.24, C:K.122 Water bridges: C:E.123, C:E.123 SO4.6: 6 residues within 4Å: Chain B: E.134, R.137, H.138 Chain D: S.39, P.40, S.41 9 PLIP interactions: 4 interactions with chain D, 5 interactions with chain B Hydrogen bonds: D:S.41, D:S.41 Water bridges: D:S.39, D:S.41, B:E.134, B:E.134, B:H.138 Salt bridges: B:R.137, B:H.138 SO4.7: 4 residues within 4Å: Chain C: H.104, R.107 Chain D: S.121, K.122 7 PLIP interactions: 6 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:R.24, D:P.120, D:K.122 Water bridges: D:E.123, D:E.123 Salt bridges: D:K.122, C:R.107 SO4.9: 4 residues within 4Å: Chain E: S.121, K.122 Chain F: H.104, R.107 7 PLIP interactions: 2 interactions with chain F, 5 interactions with chain E Salt bridges: F:H.104, F:R.107, E:K.122 Hydrogen bonds: E:R.24, E:K.122 Water bridges: E:E.123, E:E.123 SO4.10: 6 residues within 4Å: Chain D: E.134, R.137, H.138 Chain F: S.39, P.40, S.41 9 PLIP interactions: 5 interactions with chain D, 4 interactions with chain F Water bridges: D:E.134, D:E.134, D:H.138, F:S.39, F:S.41 Salt bridges: D:R.137, D:H.138 Hydrogen bonds: F:S.41, F:S.41 SO4.11: 4 residues within 4Å: Chain E: H.104, R.107 Chain F: S.121, K.122 7 PLIP interactions: 1 interactions with chain E, 6 interactions with chain F Salt bridges: E:R.107, F:K.122 Hydrogen bonds: F:R.24, F:P.120, F:K.122 Water bridges: F:E.123, F:E.123

3 x COD: DEPHOSPHO COENZYME A(Non-covalent)

COD.4: 30 residues within 4Å: Chain B: Y.7, P.8, G.9, T.10, F.11, G.17, H.18, I.21, A.37, S.39, K.42, F.70, D.72, L.73, M.74, R.88, G.89, R.91, D.95, E.99, L.102, M.105, N.106, P.120, W.124, I.127 Chain F: L.131, E.134, V.135, H.138 26 PLIP interactions: 23 interactions with chain B, 3 interactions with chain F Hydrophobic interactions: B:P.8, B:A.37 Hydrogen bonds: B:Y.7, B:T.10, B:F.11, B:M.74, B:G.89, B:R.91, B:D.95, B:D.95, B:E.99, B:W.124, F:E.134, F:E.134 Water bridges: B:T.15, B:K.42, B:A.75, B:R.88, B:R.91, B:Y.98, B:S.129, F:E.134 Salt bridges: B:H.18, B:K.42, B:R.88 pi-Cation interactions: B:R.91 COD.8: 30 residues within 4Å: Chain B: L.131, E.134, V.135, H.138 Chain D: Y.7, P.8, G.9, T.10, F.11, G.17, H.18, I.21, A.37, S.39, K.42, F.70, D.72, L.73, M.74, R.88, G.89, R.91, D.95, E.99, L.102, M.105, N.106, P.120, W.124, I.127 22 PLIP interactions: 19 interactions with chain D, 3 interactions with chain B Hydrophobic interactions: D:P.8, D:A.37 Hydrogen bonds: D:T.10, D:F.11, D:M.74, D:G.89, D:R.91, D:D.95, D:E.99, D:W.124, B:E.134 Water bridges: D:K.42, D:A.75, D:R.88, D:R.91, D:S.129, B:E.134, B:E.134 Salt bridges: D:H.18, D:K.42, D:R.88 pi-Cation interactions: D:R.91 COD.12: 30 residues within 4Å: Chain D: L.131, E.134, V.135, H.138 Chain F: Y.7, P.8, G.9, T.10, F.11, G.17, H.18, I.21, A.37, S.39, K.42, F.70, D.72, L.73, M.74, R.88, G.89, R.91, D.95, E.99, L.102, M.105, N.106, P.120, W.124, I.127 24 PLIP interactions: 21 interactions with chain F, 3 interactions with chain D Hydrophobic interactions: F:P.8, F:A.37 Hydrogen bonds: F:T.10, F:T.10, F:F.11, F:M.74, F:G.89, F:R.91, F:D.95, F:E.99, F:E.99, F:W.124, D:E.134 Water bridges: F:K.42, F:A.75, F:R.88, F:R.91, F:S.129, D:E.134, D:E.134 Salt bridges: F:H.18, F:K.42, F:R.88 pi-Cation interactions: F:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Izard, T. et al., The crystal structure of a novel bacterial adenylyltransferase reveals half of sites reactivity. EMBO J. (1999)

Release Date

2000-04-19

Peptides

PROTEIN (PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE): ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

PROTEIN (PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE)

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