SMTL ID : 1b93.1

METHYLGLYOXAL SYNTHASE FROM ESCHERICHIA COLI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-hexamer

Ligands

14 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 9 residues within 4Å: Chain A: V.17, A.18, H.19, G.66, D.71, F.88, H.98, V.102 Ligands: FMT.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.66, A:D.71 FMT.2: 7 residues within 4Å: Chain A: A.18, T.45, G.46, S.65, G.66 Ligands: FMT.1, FMT.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.45, A:T.45, A:G.66 Water bridges: A:K.23 FMT.3: 8 residues within 4Å: Chain A: L.16, V.17, A.18, K.23, L.26, T.45, T.48 Ligands: FMT.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.16, A:A.18, A:T.45, A:T.45 FMT.5: 8 residues within 4Å: Chain B: V.17, H.19, G.66, D.71, F.88, H.98, V.102 Ligands: PO4.4 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.71 FMT.6: 8 residues within 4Å: Chain C: V.17, A.18, H.19, G.66, D.71, F.88, H.98 Ligands: FMT.7 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.18, C:G.66 FMT.7: 8 residues within 4Å: Chain C: A.18, K.23, T.45, G.46, S.65, G.66 Ligands: FMT.6, FMT.8 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.23, C:G.66 Water bridges: C:T.47 FMT.8: 7 residues within 4Å: Chain C: L.16, V.17, A.18, K.23, T.45, T.48 Ligands: FMT.7 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:L.16, C:A.18, C:K.23, C:T.45, C:T.48 FMT.9: 9 residues within 4Å: Chain D: V.17, A.18, H.19, G.66, D.71, F.88, H.98, V.102 Ligands: FMT.10 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.66, D:D.71 FMT.10: 7 residues within 4Å: Chain D: A.18, T.45, G.46, S.65, G.66 Ligands: FMT.9, FMT.11 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:T.45, D:T.45, D:G.66 Water bridges: D:K.23 FMT.11: 8 residues within 4Å: Chain D: L.16, V.17, A.18, K.23, L.26, T.45, T.48 Ligands: FMT.10 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:L.16, D:A.18, D:T.45, D:T.48 FMT.13: 8 residues within 4Å: Chain E: V.17, H.19, G.66, D.71, F.88, H.98, V.102 Ligands: PO4.12 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:D.71 FMT.14: 8 residues within 4Å: Chain F: V.17, A.18, H.19, G.66, D.71, F.88, H.98 Ligands: FMT.15 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:A.18, F:G.66 FMT.15: 8 residues within 4Å: Chain F: A.18, K.23, T.45, G.46, S.65, G.66 Ligands: FMT.14, FMT.16 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:K.23, F:T.45, F:G.66 Water bridges: F:T.47 FMT.16: 7 residues within 4Å: Chain F: L.16, V.17, A.18, K.23, T.45, T.48 Ligands: FMT.15 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:L.16, F:A.18, F:K.23, F:T.45, F:T.45

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 11 residues within 4Å: Chain B: A.18, D.20, K.23, T.45, G.46, T.47, T.48, S.65, G.66 Chain E: R.150 Ligands: FMT.5 10 PLIP interactions: 7 interactions with chain B, 3 interactions with chain E Hydrogen bonds: B:T.45, B:T.45, B:T.47, B:T.48, B:S.65, B:G.66 Salt bridges: B:K.23, E:R.150 Water bridges: E:R.150, E:R.150 PO4.12: 11 residues within 4Å: Chain B: R.150 Chain E: A.18, D.20, K.23, T.45, G.46, T.47, T.48, S.65, G.66 Ligands: FMT.13 12 PLIP interactions: 9 interactions with chain E, 3 interactions with chain B Hydrogen bonds: E:T.45, E:T.45, E:T.47, E:T.47, E:T.48, E:T.48, E:S.65, E:G.66 Salt bridges: E:K.23, B:R.150 Water bridges: B:R.150, B:R.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saadat, D. et al., The crystal structure of methylglyoxal synthase from Escherichia coli. Structure Fold.Des. (1999)

Release Date

1999-03-16

Peptides

PROTEIN (METHYLGLYOXAL SYNTHASE): ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

PROTEIN (METHYLGLYOXAL SYNTHASE)

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