- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 8 x CA: CALCIUM ION(Non-covalent)
CA.2: 5 residues within 4Å:- Chain A: D.217, T.221, D.248, G.270, G.271
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.217, A:T.221, A:D.248, H2O.1, H2O.1
CA.3: 7 residues within 4Å:- Chain A: E.92
- Chain B: E.92
- Chain C: E.92
- Chain D: E.92
- Ligands: CA.7, CA.11, CA.15
4 PLIP interactions:1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain D, 1 interactions with chain C- Metal complexes: B:E.92, A:E.92, D:E.92, C:E.92
CA.6: 5 residues within 4Å:- Chain B: D.217, T.221, D.248, G.270, G.271
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.217, B:T.221, B:D.248, H2O.5, H2O.5
CA.7: 7 residues within 4Å:- Chain A: E.92
- Chain B: E.92
- Chain C: E.92
- Chain D: E.92
- Ligands: CA.3, CA.11, CA.15
4 PLIP interactions:1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain D, 1 interactions with chain C- Metal complexes: B:E.92, A:E.92, D:E.92, C:E.92
CA.10: 5 residues within 4Å:- Chain C: D.217, T.221, D.248, G.270, G.271
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.217, C:T.221, C:D.248, H2O.9, H2O.9
CA.11: 7 residues within 4Å:- Chain A: E.92
- Chain B: E.92
- Chain C: E.92
- Chain D: E.92
- Ligands: CA.3, CA.7, CA.15
4 PLIP interactions:1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain D, 1 interactions with chain C- Metal complexes: B:E.92, A:E.92, D:E.92, C:E.92
CA.14: 5 residues within 4Å:- Chain D: D.217, T.221, D.248, G.270, G.271
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.217, D:T.221, D:D.248, H2O.13, H2O.13
CA.15: 7 residues within 4Å:- Chain A: E.92
- Chain B: E.92
- Chain C: E.92
- Chain D: E.92
- Ligands: CA.3, CA.7, CA.11
4 PLIP interactions:1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain D, 1 interactions with chain C- Metal complexes: B:E.92, A:E.92, D:E.92, C:E.92
- 4 x RAI: 1-(4-CARBOXY-2-GUANIDINOPENTYL)-5,5'-DI(HYDROXYMETHYL)PYRROLIDIN-2-ONE(Non-covalent)
RAI.4: 15 residues within 4Å:- Chain A: R.40, E.41, D.73, R.74, W.101, S.102, R.147, T.148, E.150, A.169, E.199, E.200, R.216, R.298, Y.333
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:R.74, A:W.101, A:R.147
- Hydrogen bonds: A:D.73, A:R.74, A:E.150, A:E.150, A:R.216
- Salt bridges: A:R.40, A:E.199, A:E.200, A:R.216, A:R.298
RAI.8: 15 residues within 4Å:- Chain B: R.40, E.41, D.73, R.74, W.101, S.102, R.147, T.148, E.150, A.169, E.199, E.200, R.216, R.298, Y.333
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:R.74, B:W.101, B:R.147
- Hydrogen bonds: B:D.73, B:R.74, B:E.150, B:E.150, B:R.216
- Salt bridges: B:R.40, B:E.199, B:E.200, B:R.216, B:R.298
RAI.12: 15 residues within 4Å:- Chain C: R.40, E.41, D.73, R.74, W.101, S.102, R.147, T.148, E.150, A.169, E.199, E.200, R.216, R.298, Y.333
13 PLIP interactions:13 interactions with chain C- Hydrophobic interactions: C:R.74, C:W.101, C:R.147
- Hydrogen bonds: C:D.73, C:R.74, C:E.150, C:E.150, C:R.216
- Salt bridges: C:R.40, C:E.199, C:E.200, C:R.216, C:R.298
RAI.16: 15 residues within 4Å:- Chain D: R.40, E.41, D.73, R.74, W.101, S.102, R.147, T.148, E.150, A.169, E.199, E.200, R.216, R.298, Y.333
13 PLIP interactions:13 interactions with chain D- Hydrophobic interactions: D:R.74, D:W.101, D:R.147
- Hydrogen bonds: D:D.73, D:R.74, D:E.150, D:E.150, D:R.216
- Salt bridges: D:R.40, D:E.199, D:E.200, D:R.216, D:R.298
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Finley, J.B. et al., Novel aromatic inhibitors of influenza virus neuraminidase make selective interactions with conserved residues and water molecules in the active site. J.Mol.Biol. (1999)
- Release Date
- 1999-02-27
- Peptides
- PROTEIN (NEURAMINIDASE): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 8 x CA: CALCIUM ION(Non-covalent)
- 4 x RAI: 1-(4-CARBOXY-2-GUANIDINOPENTYL)-5,5'-DI(HYDROXYMETHYL)PYRROLIDIN-2-ONE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Finley, J.B. et al., Novel aromatic inhibitors of influenza virus neuraminidase make selective interactions with conserved residues and water molecules in the active site. J.Mol.Biol. (1999)
- Release Date
- 1999-02-27
- Peptides
- PROTEIN (NEURAMINIDASE): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A