SMTL ID : 1bai.1

Crystal structure of Rous sarcoma virus protease in complex with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

1 x 0Q4: N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide(Non-covalent)

0Q4.1: 29 residues within 4Å: Chain A: R.10, L.35, D.37, G.39, A.40, D.41, D.42, N.61, Q.63, I.64, H.65, G.66, I.67, P.105, V.106, I.108 Chain B: L.35, D.37, G.39, A.40, D.41, D.42, Q.63, H.65, G.66, I.67, P.105, V.106, I.108 28 PLIP interactions: 15 interactions with chain A, 13 interactions with chain B Hydrophobic interactions: A:L.35, A:I.64, A:P.105, A:V.106, A:I.108, B:L.35, B:A.40, B:I.67, B:P.105, B:V.106, B:I.108 Hydrogen bonds: A:G.39, A:D.41, A:D.41, A:D.41, A:D.42, A:H.65, A:H.65, A:H.65, B:G.39, B:D.41, B:D.42, B:D.42, B:H.65 Water bridges: A:R.10, A:R.10, B:I.67, B:I.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, J. et al., Structural basis for specificity of retroviral proteases. Biochemistry (1998)

Release Date

1999-01-13

Peptides

PROTEASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEASE