SMTL ID : 1bdb.1

CIS-BIPHENYL-2,3-DIHYDRODIOL-2,3-DEHYDROGENASE FROM PSEUDOMONAS SP. LB400

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 28 residues within 4Å: Chain A: G.12, A.14, S.15, G.16, L.17, G.18, D.36, K.37, R.41, G.58, D.59, V.60, N.86, A.87, G.88, Y.119, T.140, I.141, S.142, Y.155, K.159, S.184, G.185, G.186, I.187, S.189, D.190, L.191 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:I.187 Hydrogen bonds: A:G.12, A:A.14, A:S.15, A:S.15, A:L.17, A:G.18, A:K.37, A:R.41, A:D.59, A:V.60, A:N.86, A:Y.155, A:K.159, A:I.187, A:I.187, A:S.189, A:D.190 Water bridges: A:K.37, A:N.86, A:R.192, A:R.192 NAD.2: 28 residues within 4Å: Chain B: G.12, A.14, S.15, G.16, L.17, G.18, D.36, K.37, R.41, G.58, D.59, V.60, N.86, A.87, G.88, Y.119, T.140, I.141, S.142, Y.155, K.159, S.184, G.185, G.186, I.187, S.189, D.190, L.191 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:I.187 Hydrogen bonds: B:G.12, B:A.14, B:S.15, B:S.15, B:L.17, B:G.18, B:K.37, B:R.41, B:D.59, B:V.60, B:N.86, B:Y.155, B:K.159, B:I.187, B:I.187, B:S.189, B:D.190 Water bridges: B:K.37, B:N.86, B:R.192, B:R.192 NAD.3: 28 residues within 4Å: Chain C: G.12, A.14, S.15, G.16, L.17, G.18, D.36, K.37, R.41, G.58, D.59, V.60, N.86, A.87, G.88, Y.119, T.140, I.141, S.142, Y.155, K.159, S.184, G.185, G.186, I.187, S.189, D.190, L.191 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:I.187 Hydrogen bonds: C:G.12, C:A.14, C:S.15, C:S.15, C:L.17, C:G.18, C:K.37, C:R.41, C:D.59, C:V.60, C:N.86, C:Y.119, C:K.159, C:I.187, C:I.187, C:S.189, C:D.190 Water bridges: C:K.37, C:N.86, C:R.192, C:R.192 NAD.4: 28 residues within 4Å: Chain D: G.12, A.14, S.15, G.16, L.17, G.18, D.36, K.37, R.41, G.58, D.59, V.60, N.86, A.87, G.88, Y.119, T.140, I.141, S.142, Y.155, K.159, S.184, G.185, G.186, I.187, S.189, D.190, L.191 22 PLIP interactions: 22 interactions with chain D Hydrophobic interactions: D:I.187 Hydrogen bonds: D:G.12, D:A.14, D:S.15, D:S.15, D:L.17, D:G.18, D:K.37, D:R.41, D:D.59, D:V.60, D:N.86, D:Y.119, D:K.159, D:I.187, D:I.187, D:S.189, D:D.190 Water bridges: D:K.37, D:N.86, D:R.192, D:R.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hulsmeyer, M. et al., Crystal structure of cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase from a PCB degrader at 2.0 A resolution. Protein Sci. (1998)

Release Date

1997-11-12

Peptides

CIS-BIPHENYL-2,3-DIHYDRODIOL-2,3-DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

CIS-BIPHENYL-2,3-DIHYDRODIOL-2,3-DEHYDROGENASE