SMTL ID : 1bdl.1

HIV-1 (2:31-37) PROTEASE COMPLEXED WITH INHIBITOR SB203386

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x IM1: (2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE(Non-covalent)

IM1.1: 14 residues within 4Å: Chain A: G.27, A.28, D.29, D.30, K.45, M.46, I.47, G.48, G.49 Chain B: R.8, L.23, I.50, V.82 Ligands: IM1.2 10 PLIP interactions: 7 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:I.47, B:L.23, B:V.82, B:V.82 Hydrogen bonds: A:D.29, A:D.30, A:K.45, A:G.48, A:G.48, A:G.48 IM1.2: 12 residues within 4Å: Chain A: R.8, P.81, V.82 Chain B: G.27, A.28, D.29, D.30, K.45, I.47, G.48, I.50 Ligands: IM1.1 10 PLIP interactions: 3 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:P.81, A:V.82, A:V.82, B:I.47, B:I.50 Hydrogen bonds: B:D.29, B:D.29, B:K.45, B:G.48, B:G.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Swairjo, M.A. et al., Structural role of the 30's loop in determining the ligand specificity of the human immunodeficiency virus protease. Biochemistry (1998)

Release Date

1998-08-12

Peptides

HIV-1 PROTEASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 PROTEASE