SMTL ID : 1bg0.1

TRANSITION STATE STRUCTURE OF ARGININE KINASE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 6 residues within 4Å: Chain A: G.111, L.112, D.113, P.114, G.236, D.237 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.113, A:D.113, A:G.236 Water bridges: A:G.111 NO3.2: 9 residues within 4Å: Chain A: R.125, E.224, R.228, N.273, R.308, E.313 Ligands: MG.3, ADP.4, DAR.5 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.125, A:E.224, A:R.228, A:R.228, A:N.273, A:R.308, A:R.308 Water bridges: A:R.329

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.3: 2 residues within 4Å: Ligands: NO3.2, ADP.4 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.4: 20 residues within 4Å: Chain A: S.121, T.122, R.123, R.125, H.184, W.220, R.228, M.232, R.279, S.281, V.282, H.283, R.308, T.310, R.311, G.312, E.313, D.323 Ligands: NO3.2, MG.3 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:R.279, A:S.281, A:S.281, A:R.311, A:E.313 Water bridges: A:R.123, A:R.123, A:R.228, A:R.228, A:S.281, A:R.311 Salt bridges: A:R.123, A:R.125, A:R.228, A:R.279, A:R.279, A:R.308, A:R.308 pi-Stacking: A:H.283

1 x DAR: D-ARGININE(Non-covalent)

DAR.5: 13 residues within 4Å: Chain A: S.62, G.63, V.64, G.65, Y.67, F.193, E.224, C.270, T.272, N.273, E.313, H.314 Ligands: NO3.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:G.63, A:V.64, A:G.65, A:Y.67, A:T.272, A:N.273 Water bridges: A:S.62, A:I.66, A:Y.67, A:E.224, A:R.308, A:R.308, A:E.313, A:H.314 Salt bridges: A:E.224, A:E.313, A:H.314

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, G. et al., Transition state structure of arginine kinase: implications for catalysis of bimolecular reactions. Proc.Natl.Acad.Sci.USA (1998)

Release Date

1998-10-14

Peptides

ARGININE KINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ARGININE KINASE