SMTL ID : 1bg4.1

XYLANASE FROM PENICILLIUM SIMPLICISSIMUM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

6 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: L.226, A.227, A.229, G.230, T.231, K.261 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.229, A:G.230, A:T.231, A:K.261, A:K.261 NA.2: 5 residues within 4Å: Chain A: R.162, D.165, P.166, A.168, L.170 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.162, A:R.162, A:A.168 NA.3: 6 residues within 4Å: Chain A: Y.17, R.82, A.235, I.236, T.237, T.266 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.17, A:R.82 NA.4: 4 residues within 4Å: Chain A: I.133, S.143, F.145, Y.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.143, A:Y.153, A:Y.153 NA.5: 6 residues within 4Å: Chain A: S.49, A.54, T.63, F.64, G.66, S.67 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.49, A:G.66, A:S.67 Water bridges: A:T.63 NA.6: 7 residues within 4Å: Chain A: P.46, E.47, N.48, S.49, M.50, K.51, H.84 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.47, A:M.50, A:K.51

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.7: 5 residues within 4Å: Chain A: G.214, S.217, T.247, D.248, N.251 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.217, A:D.248 Water bridges: A:S.217, A:N.251 TRS.8: 2 residues within 4Å: Chain A: Q.24, Y.69 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.24, A:Q.24

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 5 residues within 4Å: Chain A: D.68, N.72, R.119, Y.120, K.123 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.72, A:R.119, A:K.123 Water bridges: A:D.68 GOL.10: 2 residues within 4Å: Chain A: K.193, S.228 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.193, A:K.193 GOL.11: 3 residues within 4Å: Chain A: N.48, S.49, A.54 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.48, A:S.49, A:A.54 GOL.12: 2 residues within 4Å: Chain A: H.13, L.257 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.13 Water bridges: A:H.13, A:N.258 GOL.13: 10 residues within 4Å: Chain A: K.51, H.84, W.88, E.132, Q.208, H.210, E.238, W.268, W.276 Ligands: GOL.15 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.51, A:K.51, A:E.132, A:Q.208, A:W.268 Water bridges: A:E.132 GOL.14: 9 residues within 4Å: Chain A: S.5, D.7, A.8, K.11, K.38, A.39, D.40, F.41, K.79 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.5, A:S.5, A:A.8, A:K.11, A:K.11, A:A.39 Water bridges: A:K.79, A:K.79 GOL.15: 7 residues within 4Å: Chain A: E.47, N.48, K.51, Q.91, W.268, W.276 Ligands: GOL.13 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.47, A:E.47, A:N.48, A:K.51, A:Q.91, A:Q.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmidt, A. et al., Structure of the xylanase from Penicillium simplicissimum. Protein Sci. (1998)

Release Date

1998-08-12

Peptides

ENDO-1,4-BETA-XYLANASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDO-1,4-BETA-XYLANASE

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