SMTL ID : 1bgg.1

GLUCOSIDASE A FROM BACILLUS POLYMYXA COMPLEXED WITH GLUCONATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-octamer

Ligands

6 x GCO: D-gluconic acid(Non-covalent)

GCO.1: 12 residues within 4Å: Chain B: Q.20, H.121, W.122, N.165, E.166, Y.296, W.326, E.352, W.398, E.405, W.406, F.414 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:Q.20, B:N.165, B:N.165, B:N.294, B:Y.296, B:E.352, B:W.406 Water bridges: B:N.403, B:E.405, B:E.405 Salt bridges: B:H.121 GCO.2: 12 residues within 4Å: Chain C: Q.20, H.121, W.122, N.165, E.166, Y.296, W.326, E.352, W.398, E.405, W.406, F.414 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:Q.20, C:N.165, C:Y.296, C:Y.296, C:E.352, C:W.406 Water bridges: C:E.405 Salt bridges: C:H.121 GCO.3: 13 residues within 4Å: Chain D: Q.20, H.121, W.122, N.165, E.166, N.294, Y.296, W.326, E.352, W.398, E.405, W.406, F.414 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:Q.20, D:N.165, D:N.165, D:N.294, D:E.352, D:E.405, D:W.406 Water bridges: D:E.166 Salt bridges: D:H.121 GCO.4: 12 residues within 4Å: Chain F: Q.20, H.121, W.122, N.165, E.166, Y.296, W.326, E.352, W.398, E.405, W.406, F.414 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:Q.20, F:N.165, F:N.165, F:N.294, F:E.352, F:W.406 Water bridges: F:N.403, F:E.405 Salt bridges: F:H.121 GCO.5: 12 residues within 4Å: Chain G: Q.20, H.121, W.122, N.165, E.166, Y.296, W.326, E.352, W.398, E.405, W.406, F.414 6 PLIP interactions: 6 interactions with chain G Hydrogen bonds: G:Q.20, G:N.165, G:Y.296, G:E.352, G:W.406 Salt bridges: G:H.121 GCO.6: 13 residues within 4Å: Chain H: Q.20, H.121, W.122, N.165, E.166, N.294, Y.296, W.326, E.352, W.398, E.405, W.406, F.414 8 PLIP interactions: 8 interactions with chain H Hydrogen bonds: H:Q.20, H:N.165, H:N.165, H:N.294, H:E.352, H:W.406 Water bridges: H:E.166 Salt bridges: H:H.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sanz-Aparicio, J. et al., Crystal structure of beta-glucosidase A from Bacillus polymyxa: insights into the catalytic activity in family 1 glycosyl hydrolases. J.Mol.Biol. (1998)

Release Date

1998-05-27

Peptides

BETA-GLUCOSIDASE A: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

BETA-GLUCOSIDASE A