SMTL ID : 1bhp.1

STRUCTURE OF BETA-PUROTHIONIN AT ROOM TEMPERATURE AND 1.7 ANGSTROMS RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: R.10, K.45 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.10, A:R.10 Salt bridges: A:K.1, A:R.10 PO4.6: 2 residues within 4Å: Chain B: R.10, K.45 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.10, B:R.10 Salt bridges: B:K.1, B:R.10 PO4.11: 2 residues within 4Å: Chain C: R.10, K.45 4 PLIP interactions: 4 interactions with chain C Water bridges: C:R.10, C:R.10 Salt bridges: C:K.1, C:R.10 PO4.16: 2 residues within 4Å: Chain D: R.10, K.45 4 PLIP interactions: 4 interactions with chain D Water bridges: D:R.10, D:R.10 Salt bridges: D:K.1, D:R.10

8 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 2 residues within 4Å: Chain A: N.11, L.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.11 ACT.3: 1 residues within 4Å: Chain A: K.5 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.5 ACT.7: 2 residues within 4Å: Chain B: N.11, L.15 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.11 ACT.8: 1 residues within 4Å: Chain B: K.5 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.5 ACT.12: 2 residues within 4Å: Chain C: N.11, L.15 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.11 ACT.13: 1 residues within 4Å: Chain C: K.5 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:K.5 ACT.17: 2 residues within 4Å: Chain D: N.11, L.15 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.11 ACT.18: 1 residues within 4Å: Chain D: K.5 1 PLIP interactions: 1 interactions with chain D Salt bridges: D:K.5

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: S.2, Y.13, R.17, Q.22 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.2, A:S.2, A:Y.13, A:R.17, A:R.17 Water bridges: A:R.10, A:N.14 GOL.5: 3 residues within 4Å: Chain A: T.7, L.8, N.11 No protein-ligand interaction detected (PLIP) GOL.9: 4 residues within 4Å: Chain B: S.2, Y.13, R.17, Q.22 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.2, B:S.2, B:Y.13, B:R.17, B:R.17 Water bridges: B:R.10, B:N.14 GOL.10: 3 residues within 4Å: Chain B: T.7, L.8, N.11 No protein-ligand interaction detected (PLIP) GOL.14: 4 residues within 4Å: Chain C: S.2, Y.13, R.17, Q.22 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:S.2, C:S.2, C:Y.13, C:R.17, C:R.17 Water bridges: C:R.10, C:N.14 GOL.15: 3 residues within 4Å: Chain C: T.7, L.8, N.11 No protein-ligand interaction detected (PLIP) GOL.19: 4 residues within 4Å: Chain D: S.2, Y.13, R.17, Q.22 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:S.2, D:S.2, D:Y.13, D:R.17, D:R.17 Water bridges: D:R.10, D:N.14 GOL.20: 3 residues within 4Å: Chain D: T.7, L.8, N.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stec, B. et al., Refinement of purothionins reveals solute particles important for lattice formation and toxicity. Part 2: structure of beta-purothionin at 1.7 A resolution. Acta Crystallogr.,Sect.D (1995)

Release Date

1996-03-15

Peptides

BETA-PUROTHIONIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

BETA-PUROTHIONIN