SMTL ID : 1bhx.1

X-RAY STRUCTURE OF THE COMPLEX OF HUMAN ALPHA THROMBIN WITH THE INHIBITOR SDZ 229-357

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ASP- PHE- GLU- GLU- ILE: ALPHA THROMBIN(Non-covalent)

ASP-PHE-GLU-GLU-ILE.1: 10 residues within 4Å: Chain B: F.19, Q.24, L.26, L.60, R.62, R.68, T.69, R.70, Y.71 Chain C: Q.2 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.19, B:L.26, B:L.60 Hydrogen bonds: B:T.69, B:T.69, B:Y.71 Salt bridges: B:R.68

1 x R56: 5-OXO-6-PHENYLMETHANESULFONYLAMINO-HEXAHYDRO-THIAZOLO[3,2-A]PYRIDINE-3-CARBOXYLIC ACID (3-GUANIDINO-PROPYL)-AMIDE(Non-covalent)

R56.2: 18 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, N.95 Chain C: I.25, D.45, A.46, C.47, S.51, V.71, S.72, W.73, G.74, E.75, G.76, C.77, G.84 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:I.25, C:I.25, C:V.71, C:W.73, C:W.73 Hydrogen bonds: C:S.72, C:G.74, C:G.76 Water bridges: C:W.73, C:E.75, C:G.76, C:G.76, C:G.76, C:Y.86 Salt bridges: C:D.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wagner, J. et al., Rational design, synthesis, and X-ray structure of selective noncovalent thrombin inhibitors. J.Med.Chem. (1998)

Release Date

1998-11-04

Peptides

ALPHA THROMBIN: A
ALPHA THROMBIN: B
ALPHA THROMBIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
F

ALPHA THROMBIN

ALPHA THROMBIN

ALPHA THROMBIN

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