SMTL ID : 1bi9.2 (1 other biounit)

RETINAL DEHYDROGENASE TYPE TWO WITH NAD BOUND

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-octamer

Ligands

8 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 17 residues within 4Å: Chain A: I.164, I.165, P.166, W.167, K.191, P.192, A.193, E.194, G.224, P.225, G.228, A.229, F.242, S.245, V.248, L.251, I.252 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.165, A:K.191, A:E.194, A:S.245 NAD.2: 15 residues within 4Å: Chain B: I.164, I.165, W.167, K.191, P.192, A.193, E.194, G.224, G.228, A.229, F.242, S.245, V.248, L.251, I.252 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:I.165, B:K.191, B:E.194, B:S.245, B:S.245 NAD.5: 15 residues within 4Å: Chain C: I.164, I.165, W.167, K.191, A.193, E.194, Q.195, G.224, G.228, A.229, F.242, S.245, V.248, L.251, I.252 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:K.191, C:E.194, C:E.194, C:Q.195, C:S.245 Water bridges: C:E.194 NAD.6: 16 residues within 4Å: Chain D: I.164, I.165, W.167, K.191, P.192, A.193, E.194, G.224, P.225, G.228, A.229, F.242, G.244, S.245, V.248, I.252 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:I.165, D:W.167, D:K.191, D:E.194, D:S.245, D:S.245 NAD.7: 17 residues within 4Å: Chain E: I.164, I.165, P.166, W.167, K.191, P.192, A.193, E.194, G.224, P.225, G.228, A.229, F.242, S.245, V.248, L.251, I.252 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:I.165, E:K.191, E:E.194, E:S.245 NAD.8: 15 residues within 4Å: Chain F: I.164, I.165, W.167, K.191, P.192, A.193, E.194, G.224, G.228, A.229, F.242, S.245, V.248, L.251, I.252 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:I.165, F:K.191, F:E.194, F:S.245, F:S.245 NAD.11: 15 residues within 4Å: Chain G: I.164, I.165, W.167, K.191, A.193, E.194, Q.195, G.224, G.228, A.229, F.242, S.245, V.248, L.251, I.252 6 PLIP interactions: 6 interactions with chain G Hydrogen bonds: G:K.191, G:E.194, G:E.194, G:Q.195, G:S.245 Water bridges: G:E.194 NAD.12: 16 residues within 4Å: Chain H: I.164, I.165, W.167, K.191, P.192, A.193, E.194, G.224, P.225, G.228, A.229, F.242, G.244, S.245, V.248, I.252 6 PLIP interactions: 6 interactions with chain H Hydrogen bonds: H:I.165, H:W.167, H:K.191, H:E.194, H:S.245, H:S.245

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain C: R.258 Chain G: R.258 Ligands: CL.9 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain D: R.258 Chain H: R.258 Ligands: CL.10 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain C: R.258 Chain G: R.258 Ligands: CL.3 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain D: R.258 Chain H: R.258 Ligands: CL.4 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lamb, A.L. et al., The structure of retinal dehydrogenase type II at 2.7 A resolution: implications for retinal specificity. Biochemistry (1999)

Release Date

1999-07-22

Peptides

RETINAL DEHYDROGENASE TYPE II: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

RETINAL DEHYDROGENASE TYPE II

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