SMTL ID : 1bid.1

E. COLI THYMIDYLATE SYNTHASE COMPLEXED WITH DUMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)

UMP.1: 14 residues within 4Å: Chain A: R.22, C.147, H.148, Q.166, R.167, S.168, C.169, D.170, G.174, N.178, H.208, Y.210 Chain B: R.127, R.128 14 PLIP interactions: 11 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.166, A:S.168, A:D.170, A:N.178, A:N.178, A:H.208, A:Y.210 Water bridges: A:Y.95, A:R.167, B:R.128 Salt bridges: A:R.22, A:R.167, B:R.127, B:R.128 UMP.2: 14 residues within 4Å: Chain A: R.127, R.128 Chain B: R.22, C.147, H.148, Q.166, R.167, S.168, C.169, D.170, G.174, N.178, H.208, Y.210 14 PLIP interactions: 11 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.166, B:S.168, B:D.170, B:N.178, B:N.178, B:H.208 Water bridges: B:R.167, B:D.170, B:D.170, A:R.128 Salt bridges: B:R.22, B:R.167, A:R.127, A:R.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stout, T.J. et al., The additivity of substrate fragments in enzyme-ligand binding. Structure (1998)

Release Date

1998-07-01

Peptides

THYMIDYLATE SYNTHASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

THYMIDYLATE SYNTHASE

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