SMTL ID : 1bix.1

THE CRYSTAL STRUCTURE OF THE HUMAN DNA REPAIR ENDONUCLEASE HAP1 SUGGESTS THE RECOGNITION OF EXTRA-HELICAL DEOXYRIBOSE AT DNA ABASIC SITES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

4 x SM: SAMARIUM (III) ION(Non-covalent)

SM.1: 2 residues within 4Å: Chain A: E.185, E.186 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.185, A:E.185, A:E.186, A:E.186 SM.2: 2 residues within 4Å: Chain A: D.39, E.65 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.39, A:E.65, A:E.65, H2O.3 SM.3: 2 residues within 4Å: Chain A: D.117, E.119 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.117, A:E.119, A:E.119 SM.4: 1 residues within 4Å: Chain A: L.287 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:L.287

1 x PT: PLATINUM (II) ION(Non-covalent)

PT.5: 2 residues within 4Å: Chain A: M.240, K.245 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gorman, M.A. et al., The crystal structure of the human DNA repair endonuclease HAP1 suggests the recognition of extra-helical deoxyribose at DNA abasic sites. EMBO J. (1997)

Release Date

1999-06-22

Peptides

AP ENDONUCLEASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

AP ENDONUCLEASE 1