SMTL ID : 1blf.1

STRUCTURE OF DIFERRIC BOVINE LACTOFERRIN AT 2.8 ANGSTROMS RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.1: 4 residues within 4Å: Chain A: G.472, N.476, T.667, N.671 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.667, A:N.671

1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.2: 8 residues within 4Å: Chain A: K.416, N.545, D.546, W.549, E.550, G.554, E.555, R.566 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.416, A:K.416, A:G.554

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 6 residues within 4Å: Chain A: Q.364, S.365, N.368, H.613, Q.614, L.617 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.617 Hydrogen bonds: A:N.368, A:H.613, A:Q.614

2 x FE: FE (III) ION(Non-covalent)

FE.4: 5 residues within 4Å: Chain A: D.60, Y.92, Y.192, H.253 Ligands: CO3.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.60, A:Y.92, A:Y.192, A:H.253 FE.5: 5 residues within 4Å: Chain A: D.395, Y.433, Y.526, H.595 Ligands: CO3.7 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.395, A:Y.433, A:Y.526, A:H.595

2 x CO3: CARBONATE ION(Non-functional Binders)

CO3.6: 10 residues within 4Å: Chain A: D.60, Y.92, T.117, R.121, S.122, A.123, G.124, Y.192, H.253 Ligands: FE.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.117, A:S.122, A:A.123 CO3.7: 10 residues within 4Å: Chain A: D.395, Y.433, T.459, R.463, T.464, A.465, G.466, Y.526, H.595 Ligands: FE.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.459, A:T.464, A:A.465

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moore, S.A. et al., Three-dimensional structure of diferric bovine lactoferrin at 2.8 A resolution. J.Mol.Biol. (1997)

Release Date

1997-12-03

Peptides

LACTOFERRIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LACTOFERRIN