SMTL ID : 1bmd.1

DETERMINANTS OF PROTEIN THERMOSTABILITY OBSERVED IN THE 1.9 ANGSTROMS CRYSTAL STRUCTURE OF MALATE DEHYDROGENASE FROM THE THERMOPHILIC BACTERIUM THERMUS FLAVUS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 21 residues within 4Å: Chain A: T.10, G.11, A.13, G.14, Q.15, I.16, L.41, E.42, I.43, V.87, G.88, A.89, I.108, Q.112, V.129, G.130, N.131, A.133, M.155, H.187, A.241 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.16, A:A.241 Hydrogen bonds: A:G.11, A:G.11, A:Q.15, A:Q.15, A:I.16, A:I.43, A:Q.112, A:N.131, A:N.131, A:M.155 Water bridges: A:G.17 NAD.2: 19 residues within 4Å: Chain B: T.10, G.11, A.13, G.14, Q.15, I.16, L.41, E.42, I.43, V.87, G.88, A.89, I.108, Q.112, V.129, G.130, N.131, M.155, H.187 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:I.16 Hydrogen bonds: B:G.11, B:Q.15, B:Q.15, B:I.16, B:I.43, B:A.89, B:Q.112, B:N.131, B:N.131, B:M.155 Water bridges: B:G.14, B:V.87, B:A.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kelly, C.A. et al., Determinants of protein thermostability observed in the 1.9-A crystal structure of malate dehydrogenase from the thermophilic bacterium Thermus flavus. Biochemistry (1993)

Release Date

1994-07-31

Peptides

MALATE DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MALATE DEHYDROGENASE