SMTL ID : 1bo5.2 (3 other biounits)

CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN ESCHERICHIA COLI GLYCEROL KINASE AND THE ALLOSTERIC REGULATOR FRUCTOSE 1,6-BISPHOSPHATE.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-tetramer

Ligands

2 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)

FBP.1: 7 residues within 4Å: Chain A: G.233, G.234, T.235, R.236 Chain D: G.233, G.234, R.236 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain D Hydrogen bonds: A:G.234, A:T.235, A:R.236, D:G.233, D:G.234 Salt bridges: A:R.236, A:R.236, D:R.236 FBP.4: 7 residues within 4Å: Chain B: G.233, G.234, R.236 Chain C: G.233, G.234, T.235, R.236 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:G.234, C:T.235, C:R.236, B:G.233, B:G.234 Salt bridges: C:R.236, C:R.236, B:R.236

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: R.83, E.84, W.103, Y.135, D.245, Q.246, F.270 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.83, A:R.83, A:R.83, A:E.84, A:Q.246 GOL.3: 9 residues within 4Å: Chain B: T.13, Q.82, R.83, E.84, W.103, Y.135, D.245, Q.246, F.270 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.13, B:R.83, B:R.83, B:R.83, B:E.84, B:Q.246 GOL.5: 7 residues within 4Å: Chain C: R.83, E.84, W.103, Y.135, D.245, Q.246, F.270 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:R.83, C:R.83, C:R.83, C:E.84, C:Y.135, C:Q.246 GOL.6: 9 residues within 4Å: Chain D: T.13, Q.82, R.83, E.84, W.103, Y.135, D.245, Q.246, F.270 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:T.13, D:R.83, D:R.83, D:R.83, D:E.84, D:Y.135, D:Q.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ormo, M. et al., Crystal structure of a complex of Escherichia coli glycerol kinase and an allosteric effector fructose 1,6-bisphosphate. Biochemistry (1998)

Release Date

1999-01-13

Peptides

PROTEIN (GLYCEROL KINASE): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
O

B
Z

C
O

D
Z

PROTEIN (GLYCEROL KINASE)

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