SMTL ID : 1bqu.1

CYTOKYNE-BINDING REGION OF GP130

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.127, N.128, K.132, S.164 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.128, A:N.128, A:N.128, A:S.164 Water bridges: A:K.132, A:K.132 Salt bridges: A:K.132 SO4.2: 2 residues within 4Å: Chain A: K.132 Chain B: R.182 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:R.182 Salt bridges: B:R.182, A:K.132 SO4.3: 2 residues within 4Å: Chain A: R.182, W.192 2 PLIP interactions: 2 interactions with chain A Water bridges: A:W.192 Salt bridges: A:R.182 SO4.6: 4 residues within 4Å: Chain B: T.127, N.128, K.132, S.164 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.128, B:N.128, B:S.164 Water bridges: B:S.164 Salt bridges: B:K.132 SO4.7: 2 residues within 4Å: Chain B: W.151, R.180 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.180, B:R.180 Salt bridges: B:R.180 SO4.8: 3 residues within 4Å: Chain B: R.163, F.166, T.167 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.167 Water bridges: B:D.158, B:R.163, B:R.163, B:R.163 Salt bridges: B:R.163

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: A.56, K.57, T.60, S.63, C.64, T.65 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.57, A:T.60, A:T.65, A:T.65 GOL.5: 8 residues within 4Å: Chain A: E.20, N.105, P.106, H.108, T.127, N.128, P.129, S.130 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.105, A:P.106, A:H.108, A:S.130, A:S.130 GOL.9: 6 residues within 4Å: Chain B: E.20, N.105, P.106, H.108, P.129, S.130 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.105, B:P.106, B:H.108, B:S.130, B:S.130 GOL.10: 6 residues within 4Å: Chain B: S.15, C.16, I.17, R.25, E.27, Y.191 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.15, B:S.15, B:R.25, B:R.25 GOL.11: 4 residues within 4Å: Chain B: K.23, D.67, Y.68, S.69 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.23, B:K.23, B:S.69, B:S.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bravo, J. et al., Crystal structure of a cytokine-binding region of gp130. EMBO J. (1998)

Release Date

1998-08-26

Peptides

PROTEIN (GP130): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (GP130)