SMTL ID : 1bu5.1

X-RAY CRYSTAL STRUCTURE OF THE DESULFOVIBRIO VULGARIS (HILDENBOROUGH) APOFLAVODOXIN-RIBOFLAVIN COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 10 residues within 4Å: Chain A: S.9, T.10, T.11, G.12, N.13, T.14, S.57, W.59, C.92 Ligands: RBF.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.10, A:T.11, A:G.12, A:N.13, A:T.14, A:T.14, A:T.14, A:S.57 SO4.3: 10 residues within 4Å: Chain B: G.8, S.9, T.10, T.11, G.12, N.13, T.14, S.57, W.59, C.92 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:T.10, B:T.11, B:G.12, B:N.13, B:T.14, B:T.14, B:T.14, B:S.57 Water bridges: B:N.13

2 x RBF: RIBOFLAVIN(Non-covalent)

RBF.2: 13 residues within 4Å: Chain A: T.11, N.13, T.58, W.59, G.60, C.92, G.93, D.94, Y.97, Y.99, F.100, C.101 Ligands: SO4.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:W.59, A:Y.97, A:Y.97 Hydrogen bonds: A:T.11, A:T.11, A:N.13, A:T.58, A:T.58, A:C.92, A:D.94, A:Y.99, A:C.101 Water bridges: A:Y.99 pi-Stacking: A:Y.97 RBF.4: 13 residues within 4Å: Chain B: T.11, N.13, T.58, W.59, G.60, D.61, C.92, G.93, D.94, Y.97, Y.99, F.100, C.101 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:W.59, B:Y.97 Hydrogen bonds: B:T.11, B:N.13, B:T.58, B:T.58, B:C.92, B:D.94, B:Y.99, B:C.101 Water bridges: B:Y.99, B:G.127 pi-Stacking: B:Y.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walsh, M.A. et al., X-ray crystal structure of the Desulfovibrio vulgaris (Hildenborough) apoflavodoxin-riboflavin complex. Eur.J.Biochem. (1998)

Release Date

1999-02-09

Peptides

PROTEIN (FLAVODOXIN): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (FLAVODOXIN)