SMTL ID : 1bwf.1

ESCHERICHIA COLI GLYCEROL KINASE MUTANT WITH BOUND ATP ANALOG SHOWING SUBSTANTIAL DOMAIN MOTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 2 residues within 4Å: Chain A: D.10 Ligands: ATF.2 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Ligands: ATF.5 No protein-ligand interaction detected (PLIP)

2 x ATF: PHOSPHODIFLUOROMETHYLPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ATF.2: 18 residues within 4Å: Chain A: G.12, T.13, T.14, S.15, Y.265, G.266, T.267, G.310, A.311, I.313, Q.314, A.326, Y.327, S.329, G.411, A.412, N.415 Ligands: MG.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.13, A:T.13, A:T.14, A:S.15, A:S.15, A:G.266, A:T.267, A:Q.314, A:S.329, A:G.411, A:A.412, A:N.415 ATF.5: 18 residues within 4Å: Chain B: G.12, T.13, T.14, G.266, T.267, G.310, A.311, I.313, Q.314, A.326, Y.327, S.329, G.410, G.411, A.412, N.415 Ligands: MG.4, GOL.6 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:T.13, B:T.13, B:T.13, B:T.14, B:T.267, B:T.267, B:Q.314, B:Q.314, B:S.329, B:G.411, B:A.412 Halogen bonds: B:T.14

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: T.13, Q.82, R.83, E.84, W.103, Y.135, D.245, Q.246, F.270 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.83, A:R.83, A:R.83, A:Y.135, A:Q.246 GOL.6: 10 residues within 4Å: Chain B: T.13, Q.82, R.83, E.84, W.103, Y.135, D.245, Q.246, F.270 Ligands: ATF.5 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.83, B:R.83, B:R.83, B:E.84, B:Q.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bystrom, C.E. et al., Crystal structures of Escherichia coli glycerol kinase variant S58-->W in complex with nonhydrolyzable ATP analogues reveal a putative active conformation of the enzyme as a result of domain motion. Biochemistry (1999)

Release Date

1999-05-18

Peptides

GLYCEROL KINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Y

B
O

GLYCEROL KINASE

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