SMTL ID : 1bwu.2 (2 other biounits)

MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM SATIVUM) BULBS COMPLEXED WITH ALPHA-D-MANNOSE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

7 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.1: 10 residues within 4Å: Chain A: Q.90, D.92, N.94, V.96, Y.98 Chain B: N.84, D.101, S.104, N.106, Y.108 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:D.92, A:N.94, A:Y.98, B:D.101, B:S.104, B:S.104 MAN.2: 7 residues within 4Å: Chain A: Q.58, D.60, N.62, V.64, Y.66, A.75, H.77 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.58, A:Q.58, A:D.60, A:N.62, A:Y.66 MAN.3: 5 residues within 4Å: Chain A: Q.26, D.28, N.30, Y.34, S.39 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.26, A:D.28, A:N.30, A:Y.34, A:S.39, A:S.39 Water bridges: A:D.28 MAN.4: 8 residues within 4Å: Chain A: Y.21, L.33, D.35, V.40, G.93 Chain B: T.107, Y.108, K.109 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.21, A:D.35, A:D.35, B:Y.108 MAN.5: 7 residues within 4Å: Chain A: N.84, S.104 Chain B: Q.90, D.92, N.94, V.96, Y.98 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.90, B:D.92, B:D.92, B:N.94, B:Y.98, B:Y.98, A:S.104, A:S.104 MAN.6: 7 residues within 4Å: Chain B: Q.58, D.60, N.62, Y.66, S.72, A.75, V.79 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.58, B:D.60, B:N.62, B:S.72 MAN.7: 8 residues within 4Å: Chain B: Q.26, D.28, N.30, V.32, Y.34, A.39, S.42, D.46 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.26, B:D.28, B:N.30, B:Y.34, B:S.42, B:S.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chandra, N.R. et al., Crystal structure of a dimeric mannose-specific agglutinin from garlic: quaternary association and carbohydrate specificity. J.Mol.Biol. (1999)

Release Date

1999-01-20

Peptides

PROTEIN (AGGLUTININ): A
PROTEIN (AGGLUTININ): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
Q

PROTEIN (AGGLUTININ)

PROTEIN (AGGLUTININ)

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