- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 7 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)
ZN.2: 1 residues within 4Å:- Chain A: D.2
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:D.2, A:D.2
ZN.3: 5 residues within 4Å:- Chain A: D.52, W.100, R.115
- Ligands: ACT.4, ACT.5
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Ligand interactions- Metal complexes: A:D.52, ACT.4, ACT.5
ZN.7: 2 residues within 4Å:- Chain A: D.2, D.35
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.35, H2O.3, H2O.5, H2O.5
ZN.8: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)ZN.13: 1 residues within 4Å:- Chain B: E.10
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.10, B:E.10, H2O.11
ZN.15: 4 residues within 4Å:- Chain B: D.52, R.115
- Ligands: ACT.11, ACT.12
5 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions, 2 Ligand-Ligand interactions- Metal complexes: B:D.52, B:D.52, H2O.11, ACT.11, ACT.12
ZN.16: 2 residues within 4Å:- Chain B: D.2, D.35
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.35, H2O.11, H2O.11
- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.4: 8 residues within 4Å:- Chain A: D.52, Q.98, W.100, D.107, R.115
- Ligands: ZN.3, ACT.5, GOL.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.98
- Salt bridges: A:R.115
ACT.5: 4 residues within 4Å:- Chain A: D.52, R.115
- Ligands: ZN.3, ACT.4
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.115
ACT.11: 8 residues within 4Å:- Chain B: D.52, Q.98, W.100, D.107, R.115
- Ligands: ACT.12, ZN.15, GOL.17
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.98
- Salt bridges: B:R.115
ACT.12: 4 residues within 4Å:- Chain B: D.52, R.115
- Ligands: ACT.11, ZN.15
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.115
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 9 residues within 4Å:- Chain A: E.86, S.88, N.89, W.100, D.107, D.108, V.109
- Ligands: CA.1, ACT.4
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.88, A:D.107
- Water bridges: A:N.89
GOL.17: 9 residues within 4Å:- Chain B: E.86, S.88, N.89, W.100, D.107, D.108, V.109
- Ligands: CA.10, ACT.11
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.88, B:D.107
- Water bridges: B:N.89
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Poget, S.F. et al., The structure of a tunicate C-type lectin from Polyandrocarpa misakiensis complexed with D -galactose. J.Mol.Biol. (1999)
- Release Date
- 1999-07-23
- Peptides
- PROTEIN (POLYANDROCARPA LECTIN): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 7 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Poget, S.F. et al., The structure of a tunicate C-type lectin from Polyandrocarpa misakiensis complexed with D -galactose. J.Mol.Biol. (1999)
- Release Date
- 1999-07-23
- Peptides
- PROTEIN (POLYANDROCARPA LECTIN): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B