SMTL ID : 1byu.1

CANINE GDP-RAN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.24 Ligands: GDP.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.24, H2O.1, H2O.1, H2O.1, H2O.1 MG.3: 2 residues within 4Å: Chain B: T.24 Ligands: GDP.4 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:T.24, H2O.4, H2O.4, H2O.4, H2O.4

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 15 residues within 4Å: Chain A: D.18, G.19, G.20, T.21, G.22, K.23, T.24, T.25, N.122, K.123, D.125, S.150, A.151, K.152 Ligands: MG.1 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:D.18, A:G.20, A:T.21, A:T.21, A:G.22, A:K.23, A:T.24, A:T.25, A:T.25, A:E.70, A:N.122, A:K.123, A:A.151, A:K.152, A:K.152 Water bridges: A:T.24, A:T.24 Salt bridges: A:K.23, A:D.125 GDP.4: 15 residues within 4Å: Chain B: D.18, G.19, G.20, T.21, G.22, K.23, T.24, T.25, N.122, K.123, D.125, S.150, A.151, K.152 Ligands: MG.3 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:D.18, B:G.20, B:T.21, B:T.21, B:G.22, B:K.23, B:T.24, B:T.25, B:T.25, B:E.70, B:E.70, B:N.122, B:K.123, B:A.151, B:K.152, B:K.152 Water bridges: B:T.24, B:T.24 Salt bridges: B:K.23, B:D.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stewart, M. et al., The structure of the Q69L mutant of GDP-Ran shows a major conformational change in the switch II loop that accounts for its failure to bind nuclear transport factor 2 (NTF2). J.Mol.Biol. (1998)

Release Date

1998-12-02

Peptides

PROTEIN (GTP-BINDING PROTEIN RAN): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (GTP-BINDING PROTEIN RAN)