SMTL ID : 1bzs.1

CRYSTAL STRUCTURE OF MMP8 COMPLEXED WITH HMR2909

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.59, G.91, I.92, G.93, D.95 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.59, A:G.91, A:G.93, A:D.95, H2O.2, H2O.2 CA.2: 6 residues within 4Å: Chain A: D.76, G.77, N.79, I.81, D.99, E.102 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.76, A:G.77, A:N.79, A:I.81, A:D.99, A:E.102

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.69, D.71, H.84, H.97 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.69, A:D.71, A:H.84, A:H.97 ZN.4: 4 residues within 4Å: Chain A: H.119, H.123, H.129 Ligands: BSI.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.119, A:H.123, A:H.129

1 x BSI: 2-(BIPHENYL-4-SULFONYL)-1,2,3,4-TETRAHYDRO-ISOQUINOLINE-3-CARBOXYLIC ACID(Non-covalent)

BSI.5: 15 residues within 4Å: Chain A: I.81, L.82, A.83, L.115, H.119, E.120, H.123, H.129, L.136, Y.138, P.139, N.140, Y.141, R.144 Ligands: ZN.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:H.119, A:L.136, A:Y.141 Hydrogen bonds: A:A.83 Salt bridges: A:H.119, A:H.123, A:H.129 pi-Stacking: A:H.119 pi-Cation interactions: A:H.129

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.6: 8 residues within 4Å: Chain A: E.30, R.33, D.37, N.106, F.114, T.146, S.147, Y.149 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.106, A:Y.149, A:Y.149 Salt bridges: A:D.37, A:D.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matter, H. et al., Quantitative structure-activity relationship of human neutrophil collagenase (MMP-8) inhibitors using comparative molecular field analysis and X-ray structure analysis. J.Med.Chem. (1999)

Release Date

2000-05-31

Peptides

NEUTROPHIL COLLAGENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NEUTROPHIL COLLAGENASE