- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.1: 3 residues within 4Å:- Chain A: D.134
- Ligands: IMU.3, POP.4
No protein-ligand interaction detected (PLIP)MG.2: 2 residues within 4Å:- Chain A: D.193
- Ligands: POP.4
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.193, H2O.2, H2O.2, H2O.3
MG.5: 3 residues within 4Å:- Chain B: D.134
- Ligands: IMU.7, POP.8
No protein-ligand interaction detected (PLIP)MG.6: 3 residues within 4Å:- Chain B: D.193, R.199
- Ligands: POP.8
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.193, H2O.5, H2O.5, H2O.6
MG.9: 4 residues within 4Å:- Chain C: E.133, D.134
- Ligands: IMU.11, POP.12
No protein-ligand interaction detected (PLIP)MG.10: 2 residues within 4Å:- Chain C: D.193
- Ligands: POP.12
5 PLIP interactions:1 interactions with chain C, 3 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: C:D.193, H2O.7, H2O.8, H2O.8, POP.12
MG.13: 2 residues within 4Å:- Ligands: IMU.15, POP.16
No protein-ligand interaction detected (PLIP)MG.14: 2 residues within 4Å:- Chain D: D.193
- Ligands: POP.16
4 PLIP interactions:1 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:D.193, H2O.10, H2O.11, H2O.12
- 4 x IMU: PHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN-2-YLMETHYL] ESTER(Non-covalent)
IMU.3: 17 residues within 4Å:- Chain A: Y.104, E.133, D.134, I.135, D.137, T.138, G.139, K.140, T.141, K.165, K.185, F.186, V.187, L.192, D.193
- Ligands: MG.1, POP.4
24 PLIP interactions:24 interactions with chain A- Hydrophobic interactions: A:I.135
- Hydrogen bonds: A:Y.104, A:D.134, A:D.137, A:D.137, A:D.137, A:T.138, A:T.138, A:T.138, A:G.139, A:K.140, A:T.141, A:T.141, A:K.165, A:V.187, A:V.187, A:V.187
- Water bridges: A:G.69, A:S.103, A:M.142, A:D.193, A:D.193
- pi-Stacking: A:F.186
- pi-Cation interactions: A:F.186
IMU.7: 18 residues within 4Å:- Chain B: Y.104, E.133, D.134, I.135, I.136, D.137, T.138, G.139, K.140, T.141, K.165, K.185, F.186, V.187, L.192, D.193
- Ligands: MG.5, POP.8
25 PLIP interactions:25 interactions with chain B- Hydrophobic interactions: B:I.135
- Hydrogen bonds: B:Y.104, B:D.134, B:D.137, B:D.137, B:D.137, B:T.138, B:T.138, B:T.138, B:G.139, B:K.140, B:T.141, B:T.141, B:K.165, B:V.187, B:V.187, B:V.187
- Water bridges: B:G.69, B:S.103, B:S.109, B:M.142, B:M.142, B:D.193, B:D.193
- pi-Stacking: B:Y.104
IMU.11: 17 residues within 4Å:- Chain C: Y.104, E.133, D.134, I.135, D.137, T.138, G.139, K.140, T.141, K.165, K.185, F.186, V.187, L.192, D.193
- Ligands: MG.9, POP.12
21 PLIP interactions:21 interactions with chain C- Hydrophobic interactions: C:I.135
- Hydrogen bonds: C:D.134, C:D.137, C:D.137, C:T.138, C:T.138, C:T.138, C:G.139, C:K.140, C:T.141, C:T.141, C:K.165, C:V.187, C:V.187, C:V.187
- Water bridges: C:G.69, C:S.103, C:S.109, C:M.142, C:M.142, C:D.193
IMU.15: 18 residues within 4Å:- Chain D: Y.104, E.133, D.134, I.135, I.136, D.137, T.138, G.139, K.140, T.141, K.165, K.185, F.186, V.187, L.192, D.193
- Ligands: MG.13, POP.16
25 PLIP interactions:25 interactions with chain D- Hydrophobic interactions: D:I.135
- Hydrogen bonds: D:D.134, D:D.137, D:D.137, D:T.138, D:T.138, D:T.138, D:G.139, D:K.140, D:T.141, D:T.141, D:K.165, D:V.187, D:V.187, D:V.187
- Water bridges: D:G.69, D:S.103, D:S.109, D:E.133, D:M.142, D:D.193, D:D.193
- pi-Stacking: D:Y.104, D:F.186
- pi-Cation interactions: D:F.186
- 4 x POP: PYROPHOSPHATE 2-(Non-covalent)
POP.4: 12 residues within 4Å:- Chain A: L.67, K.68, G.69, L.101, K.102, S.103, Y.104, D.193, R.199
- Ligands: MG.1, MG.2, IMU.3
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:K.68, A:G.69, A:S.103, A:Y.104
- Water bridges: A:G.70, A:Y.104, A:D.193, A:R.199, A:R.199
- Salt bridges: A:R.199
POP.8: 12 residues within 4Å:- Chain B: L.67, K.68, G.69, L.101, K.102, S.103, Y.104, D.193, R.199
- Ligands: MG.5, MG.6, IMU.7
13 PLIP interactions:13 interactions with chain B- Hydrogen bonds: B:K.68, B:G.69, B:S.103, B:Y.104
- Water bridges: B:G.70, B:L.101, B:K.102, B:Y.104, B:D.193, B:R.199, B:R.199, B:R.199
- Salt bridges: B:R.199
POP.12: 12 residues within 4Å:- Chain C: L.67, K.68, G.69, L.101, K.102, S.103, Y.104, D.193, R.199
- Ligands: MG.9, MG.10, IMU.11
14 PLIP interactions:14 interactions with chain C- Hydrogen bonds: C:K.68, C:G.69, C:S.103, C:Y.104
- Water bridges: C:G.70, C:L.101, C:L.101, C:K.102, C:K.102, C:T.141, C:D.193
- Salt bridges: C:K.102, C:K.102, C:R.199
POP.16: 13 residues within 4Å:- Chain D: L.67, K.68, G.69, R.100, L.101, K.102, S.103, Y.104, D.193, R.199
- Ligands: MG.13, MG.14, IMU.15
13 PLIP interactions:13 interactions with chain D- Hydrogen bonds: D:K.68, D:G.69, D:R.100, D:S.103, D:Y.104
- Water bridges: D:G.70, D:K.102, D:T.141, D:D.193, D:D.193, D:R.199
- Salt bridges: D:K.102, D:R.199
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shi, W. et al., The 2.0 A structure of human hypoxanthine-guanine phosphoribosyltransferase in complex with a transition-state analog inhibitor. Nat.Struct.Biol. (1999)
- Release Date
- 1999-06-22
- Peptides
- HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 4 x IMU: PHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN-2-YLMETHYL] ESTER(Non-covalent)
- 4 x POP: PYROPHOSPHATE 2-(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shi, W. et al., The 2.0 A structure of human hypoxanthine-guanine phosphoribosyltransferase in complex with a transition-state analog inhibitor. Nat.Struct.Biol. (1999)
- Release Date
- 1999-06-22
- Peptides
- HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D