SMTL ID : 1c0i.1

CRYSTAL STRUCTURE OF D-AMINO ACID OXIDASE IN COMPLEX WITH TWO ANTHRANYLATE MOLECULES

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 37 residues within 4Å: Chain A: G.13, S.14, G.15, V.16, I.17, A.36, R.37, D.38, F.48, A.49, S.50, W.52, A.53, G.54, A.55, N.56, R.162, T.163, V.164, A.180, T.181, G.182, G.184, I.188, G.201, T.203, Y.225, G.285, R.287, P.288, S.336, S.337, A.338, G.339, Y.340, Q.341 Ligands: BE2.2 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:W.52, A:T.203, A:R.287 Hydrogen bonds: A:S.14, A:G.15, A:I.17, A:R.37, A:R.37, A:D.38, A:D.38, A:D.38, A:A.49, A:S.50, A:S.50, A:S.50, A:G.54, A:N.56, A:N.56, A:N.56, A:V.164, A:V.164, A:S.336, A:A.338, A:G.339, A:Y.340, A:Q.341 Water bridges: A:G.18, A:R.37, A:R.37, A:G.182 pi-Cation interactions: A:R.37, A:R.287 FAD.4: 37 residues within 4Å: Chain B: G.13, S.14, G.15, V.16, I.17, A.36, R.37, D.38, F.48, A.49, S.50, W.52, A.53, G.54, A.55, N.56, R.162, T.163, V.164, A.180, T.181, G.182, G.184, I.188, G.201, T.203, Y.225, G.285, R.287, P.288, S.336, S.337, A.338, G.339, Y.340, Q.341 Ligands: BE2.5 31 PLIP interactions: 31 interactions with chain B Hydrophobic interactions: B:W.52, B:T.203, B:R.287 Hydrogen bonds: B:S.14, B:G.15, B:I.17, B:R.37, B:R.37, B:D.38, B:D.38, B:A.49, B:S.50, B:S.50, B:S.50, B:G.54, B:N.56, B:N.56, B:N.56, B:V.164, B:V.164, B:S.336, B:A.338, B:G.339, B:Y.340, B:Q.341 Water bridges: B:G.18, B:R.37, B:R.37, B:G.182 pi-Cation interactions: B:R.37, B:R.287

4 x BE2: 2-AMINOBENZOIC ACID(Non-covalent)

BE2.2: 10 residues within 4Å: Chain A: N.56, T.58, F.60, M.215, Y.225, I.227, R.287, S.337 Ligands: FAD.1, BE2.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.60, A:I.227 Hydrogen bonds: A:S.337 Salt bridges: A:R.287 pi-Stacking: A:Y.225 BE2.3: 4 residues within 4Å: Chain A: F.60, Y.240, S.337 Ligands: BE2.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.60, A:F.60, A:Y.240, A:Y.240 BE2.5: 10 residues within 4Å: Chain B: N.56, T.58, F.60, M.215, Y.225, I.227, R.287, S.337 Ligands: FAD.4, BE2.6 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.60, B:I.227 Hydrogen bonds: B:S.337 Salt bridges: B:R.287 pi-Stacking: B:Y.225 BE2.6: 4 residues within 4Å: Chain B: F.60, Y.240, S.337 Ligands: BE2.5 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.60, B:F.60, B:Y.240, B:Y.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pollegioni, L. et al., Yeast d-amino Acid oxidase: structural basis of its catalytic properties. J.Mol.Biol. (2002)

Release Date

2002-02-27

Peptides

D-AMINO ACID OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

D-AMINO ACID OXIDASE

Related Entries With Identical Sequence