SMTL ID : 1c1y.1

CRYSTAL STRUCTURE OF RAP.GMPPNP IN COMPLEX WITH THE RAS-BINDING-DOMAIN OF C-RAF1 KINASE (RAFRBD).

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.17, T.35, D.57 Ligands: GTP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.17, A:T.35, H2O.1, H2O.1

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 25 residues within 4Å: Chain A: S.11, G.12, G.13, V.14, G.15, K.16, S.17, A.18, F.28, V.29, E.30, K.31, Y.32, P.34, T.35, A.59, G.60, N.116, K.117, D.119, L.120, S.147, A.148, K.149 Ligands: MG.1 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:G.13, A:V.14, A:G.15, A:K.16, A:S.17, A:A.18, A:V.29, A:T.35, A:G.60, A:N.116, A:K.117, A:K.117, A:A.148, A:K.149 Water bridges: A:S.17, A:S.17, A:D.33, A:T.35, A:T.35, A:T.61, A:T.61 Salt bridges: A:K.16, A:K.16, A:D.119 pi-Stacking: A:F.28, A:F.28

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain B: G.69, E.71 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:G.69, B:E.71, B:E.71, H2O.3, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nassar, N., The 2.2 A crystal structure of the Ras-binding domain of the serine/threonine kinase c-Raf1 in complex with Rap1A and a GTP analogue. Nature (1995)

Release Date

1999-08-02

Peptides

RAS-RELATED PROTEIN RAP-1A: A
PROTO-ONCOGENE SERINE/THREONINE PROTEIN KINASE RAF-1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RAS-RELATED PROTEIN RAP-1A

PROTO-ONCOGENE SERINE/THREONINE PROTEIN KINASE RAF-1

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