SMTL ID : 1c1z.1

CRYSTAL STRUCTURE OF HUMAN BETA-2-GLYCOPROTEIN-I (APOLIPOPROTEIN-H)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.87 Å

Oligo State

monomer

Ligands

1 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NDG.1: 1 residues within 4Å: Chain A: N.143 No protein-ligand interaction detected (PLIP)

1 x NAG- NDG- BMA- BMA- MAN: beta-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NDG-BMA-BMA-MAN.2: 4 residues within 4Å: Chain A: H.172, N.174, W.175, K.177 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.177 Hydrogen bonds: A:N.174

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.3: 4 residues within 4Å: Chain A: L.232, N.234, W.235, S.236 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.164 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schwarzenbacher, R. et al., Crystal structure of human beta2-glycoprotein I: implications for phospholipid binding and the antiphospholipid syndrome. EMBO J. (1999)

Release Date

1999-11-19

Peptides

BETA2-GLYCOPROTEIN-I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA2-GLYCOPROTEIN-I