SMTL ID : 1c39.1

STRUCTURE OF CATION-DEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR BOUND TO PENTAMANNOSYL PHOSPHATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: S.58, R.77, N.79, E.80 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain B: R.77, N.79, E.80 No protein-ligand interaction detected (PLIP)

2 x MAN- MAN- M6P: 6-O-phosphono-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose

MAN-MAN-M6P.3: 15 residues within 4Å: Chain A: P.40, D.41, Y.43, Q.64, Q.66, N.69, Y.100, D.101, N.102, H.103, R.109, E.131, R.133, Y.141 Ligands: MN.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.64, A:Q.64, A:D.101, A:N.102, A:R.109, A:E.131, A:R.133, A:D.41, A:Y.43 Salt bridges: A:H.103 MAN-MAN-M6P.4: 15 residues within 4Å: Chain B: P.40, D.41, Y.43, Q.64, Q.66, N.69, Y.100, D.101, N.102, H.103, R.109, E.131, R.133, Y.141 Ligands: MN.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.64, B:Q.64, B:D.101, B:N.102, B:R.109, B:R.109, B:E.131, B:R.133, B:Y.141, B:Y.43, B:Y.43 Salt bridges: B:H.103

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.5: 3 residues within 4Å: Chain A: D.101, R.109 Ligands: MAN-MAN-M6P.3 No protein-ligand interaction detected (PLIP) MN.6: 3 residues within 4Å: Chain B: D.101, R.109 Ligands: MAN-MAN-M6P.4 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.101, H2O.6, H2O.6, H2O.7, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Olson, L.J. et al., Structural basis for recognition of phosphorylated high mannose oligosaccharides by the cation-dependent mannose 6-phosphate receptor. J.Biol.Chem. (1999)

Release Date

2000-01-14

Peptides

CATION-DEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CATION-DEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR

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