SMTL ID : 1c3d.1

X-RAY CRYSTAL STRUCTURE OF C3D: A C3 FRAGMENT AND LIGAND FOR COMPLEMENT RECEPTOR 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: T.13, P.14, S.15, Q.20, I.23, G.24 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.15, A:Q.20, A:G.24 GOL.2: 6 residues within 4Å: Chain A: W.84, E.127, P.130, V.131, Q.134, I.137 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.82, A:S.82, A:V.131, A:Q.134 Water bridges: A:N.143 GOL.3: 5 residues within 4Å: Chain A: L.190, Q.191, V.196, K.216, T.220 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.216, A:T.220 GOL.4: 4 residues within 4Å: Chain A: I.23, P.27, G.271, G.272 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.272, A:G.272 Water bridges: A:G.271, A:G.272 GOL.5: 5 residues within 4Å: Chain A: V.97, N.98, L.99, I.100, A.101 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.98, A:L.99 Water bridges: A:N.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nagar, B. et al., X-ray crystal structure of C3d: a C3 fragment and ligand for complement receptor 2. Science (1998)

Release Date

1998-10-07

Peptides

C3D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C3D

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